Cargando…
Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach
The present study examines the potential activity prediction based on free binding energy (ΔG) and interaction confirmation of phytocompounds from Artocarpus champeden (Lour.) Stokes with macromolecule protein receptor of dipeptidyl peptidase IV (DPP-IV) using in silico molecular docking studies and...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer - Medknow
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355056/ https://www.ncbi.nlm.nih.gov/pubmed/35935696 http://dx.doi.org/10.4103/japtr.japtr_376_22 |
_version_ | 1784763208036253696 |
---|---|
author | Supandi, Supandi Wulandari, Mesy Savira Samsul, Erwin Azminah, Azminah Purwoko, Reza Yuridian Herman, Herman Kuncoro, Hadi Ibrahim, Arsyik Silfi Ambarwati, Neneng Siti Rosmalena, Rosmalena Azizah, Rizqi Nur Paramita, Swandari Ahmad, Islamudin |
author_facet | Supandi, Supandi Wulandari, Mesy Savira Samsul, Erwin Azminah, Azminah Purwoko, Reza Yuridian Herman, Herman Kuncoro, Hadi Ibrahim, Arsyik Silfi Ambarwati, Neneng Siti Rosmalena, Rosmalena Azizah, Rizqi Nur Paramita, Swandari Ahmad, Islamudin |
author_sort | Supandi, Supandi |
collection | PubMed |
description | The present study examines the potential activity prediction based on free binding energy (ΔG) and interaction confirmation of phytocompounds from Artocarpus champeden (Lour.) Stokes with macromolecule protein receptor of dipeptidyl peptidase IV (DPP-IV) using in silico molecular docking studies and physicochemical and pharmacokinetic properties (ADME-Tox) prediction approaches. The active subsites of the DPP-IV receptor macromolecule protein Protein Data Bank (ID: 1 × 70) were docked using Autodock v4.2.6 (100 docking runs). A grid box of 52 × 28 × 26 Å points spaced by 0.37 Å was centered on the active site of x = 40.926 Å; y = 50.522 Å; z = 35.031 Å. For ADME-Tox prediction, Swiss ADME online-based application programs were used. The results show that 12 pythocompounds from A. champeden have the potential as DPP-IV inhibitors based on ΔG value and interaction conformation. There are five pythocompounds with lower ΔG values and inhibition constants than the native ligand and seven pythocompounds with ΔG values and inhibition constants close to the native ligand. The 12 compounds form an interaction conformation at the active subsites of the DPP-IV receptor. At the same time, the results of the ADME-Tox prediction analysis showed that the 12 compounds had different physicochemical and pharmacokinetic properties. |
format | Online Article Text |
id | pubmed-9355056 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Wolters Kluwer - Medknow |
record_format | MEDLINE/PubMed |
spelling | pubmed-93550562022-08-06 Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach Supandi, Supandi Wulandari, Mesy Savira Samsul, Erwin Azminah, Azminah Purwoko, Reza Yuridian Herman, Herman Kuncoro, Hadi Ibrahim, Arsyik Silfi Ambarwati, Neneng Siti Rosmalena, Rosmalena Azizah, Rizqi Nur Paramita, Swandari Ahmad, Islamudin J Adv Pharm Technol Res Original Article The present study examines the potential activity prediction based on free binding energy (ΔG) and interaction confirmation of phytocompounds from Artocarpus champeden (Lour.) Stokes with macromolecule protein receptor of dipeptidyl peptidase IV (DPP-IV) using in silico molecular docking studies and physicochemical and pharmacokinetic properties (ADME-Tox) prediction approaches. The active subsites of the DPP-IV receptor macromolecule protein Protein Data Bank (ID: 1 × 70) were docked using Autodock v4.2.6 (100 docking runs). A grid box of 52 × 28 × 26 Å points spaced by 0.37 Å was centered on the active site of x = 40.926 Å; y = 50.522 Å; z = 35.031 Å. For ADME-Tox prediction, Swiss ADME online-based application programs were used. The results show that 12 pythocompounds from A. champeden have the potential as DPP-IV inhibitors based on ΔG value and interaction conformation. There are five pythocompounds with lower ΔG values and inhibition constants than the native ligand and seven pythocompounds with ΔG values and inhibition constants close to the native ligand. The 12 compounds form an interaction conformation at the active subsites of the DPP-IV receptor. At the same time, the results of the ADME-Tox prediction analysis showed that the 12 compounds had different physicochemical and pharmacokinetic properties. Wolters Kluwer - Medknow 2022 2022-07-05 /pmc/articles/PMC9355056/ /pubmed/35935696 http://dx.doi.org/10.4103/japtr.japtr_376_22 Text en Copyright: © 2022 Journal of Advanced Pharmaceutical Technology & Research https://creativecommons.org/licenses/by-nc-sa/4.0/This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Supandi, Supandi Wulandari, Mesy Savira Samsul, Erwin Azminah, Azminah Purwoko, Reza Yuridian Herman, Herman Kuncoro, Hadi Ibrahim, Arsyik Silfi Ambarwati, Neneng Siti Rosmalena, Rosmalena Azizah, Rizqi Nur Paramita, Swandari Ahmad, Islamudin Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title | Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title_full | Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title_fullStr | Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title_full_unstemmed | Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title_short | Dipeptidyl peptidase IV inhibition of phytocompounds from Artocarpus champeden (Lour.) Stokes: In silico molecular docking study and ADME-Tox prediction approach |
title_sort | dipeptidyl peptidase iv inhibition of phytocompounds from artocarpus champeden (lour.) stokes: in silico molecular docking study and adme-tox prediction approach |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355056/ https://www.ncbi.nlm.nih.gov/pubmed/35935696 http://dx.doi.org/10.4103/japtr.japtr_376_22 |
work_keys_str_mv | AT supandisupandi dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT wulandarimesysavira dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT samsulerwin dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT azminahazminah dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT purwokorezayuridian dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT hermanherman dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT kuncorohadi dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT ibrahimarsyik dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT silfiambarwatinenengsiti dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT rosmalenarosmalena dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT azizahrizqinur dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT paramitaswandari dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach AT ahmadislamudin dipeptidylpeptidaseivinhibitionofphytocompoundsfromartocarpuschampedenlourstokesinsilicomoleculardockingstudyandadmetoxpredictionapproach |