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Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals

Eye irritation and corrosion are fundamental considerations in developing chemicals to be used in or near the eye, from cleaning products to ophthalmic solutions. Unfortunately, animal testing is currently the standard method to identify compounds that cause eye irritation or corrosion. Yet, there i...

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Autores principales: Silva, Arthur C., Borba, Joyce V.V.B., Alves, Vinicius M., Hall, Steven U.S., Furnham, Nicholas, Kleinstreuer, Nicole, Muratov, Eugene, Tropsha, Alexander, Andrade, Carolina Horta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355119/
https://www.ncbi.nlm.nih.gov/pubmed/35935266
http://dx.doi.org/10.1016/j.ailsci.2021.100028
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author Silva, Arthur C.
Borba, Joyce V.V.B.
Alves, Vinicius M.
Hall, Steven U.S.
Furnham, Nicholas
Kleinstreuer, Nicole
Muratov, Eugene
Tropsha, Alexander
Andrade, Carolina Horta
author_facet Silva, Arthur C.
Borba, Joyce V.V.B.
Alves, Vinicius M.
Hall, Steven U.S.
Furnham, Nicholas
Kleinstreuer, Nicole
Muratov, Eugene
Tropsha, Alexander
Andrade, Carolina Horta
author_sort Silva, Arthur C.
collection PubMed
description Eye irritation and corrosion are fundamental considerations in developing chemicals to be used in or near the eye, from cleaning products to ophthalmic solutions. Unfortunately, animal testing is currently the standard method to identify compounds that cause eye irritation or corrosion. Yet, there is growing pressure on the part of regulatory agencies both in the USA and abroad to develop New Approach Methodologies (NAMs) that help reduce the need for animal testing and address unmet need to modernize safety evaluation of chemical hazards. In furthering the development and applications of computational NAMs in chemical safety assessment, in this study we have collected the largest expertly curated dataset of compounds tested for eye irritation and corrosion, and employed this data to build and validate binary and multi-classification Quantitative Structure-Activity Relationships (QSAR) models that can reliably assess eye irritation/corrosion potential of novel untested compounds. QSAR models were generated with Random Forest (RF) and Multi-Descriptor Read Across (MuDRA) machine learning (ML) methods, and validated using a 5-fold external cross-validation protocol. These models demonstrated high balanced accuracy (CCR of 0.68–0.88), sensitivity (SE of 0.61–0.84), positive predictive value (PPV of 0.65–0.90), specificity (SP of 0.56–0.91), and negative predictive value (NPV of 0.68–0.85). Overall, MuDRA models outperformed RF models and were applied to predict compounds’ irritation/corrosion potential from the Inactive Ingredient Database, which contains components present in FDA-approved drug products, and from the Cosmetic Ingredient Database, the European Commission source of information on cosmetic substances. All models built and validated in this study are publicly available at the STopTox web portal (https://stoptox.mml.unc.edu/). These models can be employed as reliable tools for identifying potential eye irritant/corrosive compounds
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spelling pubmed-93551192022-08-05 Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals Silva, Arthur C. Borba, Joyce V.V.B. Alves, Vinicius M. Hall, Steven U.S. Furnham, Nicholas Kleinstreuer, Nicole Muratov, Eugene Tropsha, Alexander Andrade, Carolina Horta Artif Intell Life Sci Article Eye irritation and corrosion are fundamental considerations in developing chemicals to be used in or near the eye, from cleaning products to ophthalmic solutions. Unfortunately, animal testing is currently the standard method to identify compounds that cause eye irritation or corrosion. Yet, there is growing pressure on the part of regulatory agencies both in the USA and abroad to develop New Approach Methodologies (NAMs) that help reduce the need for animal testing and address unmet need to modernize safety evaluation of chemical hazards. In furthering the development and applications of computational NAMs in chemical safety assessment, in this study we have collected the largest expertly curated dataset of compounds tested for eye irritation and corrosion, and employed this data to build and validate binary and multi-classification Quantitative Structure-Activity Relationships (QSAR) models that can reliably assess eye irritation/corrosion potential of novel untested compounds. QSAR models were generated with Random Forest (RF) and Multi-Descriptor Read Across (MuDRA) machine learning (ML) methods, and validated using a 5-fold external cross-validation protocol. These models demonstrated high balanced accuracy (CCR of 0.68–0.88), sensitivity (SE of 0.61–0.84), positive predictive value (PPV of 0.65–0.90), specificity (SP of 0.56–0.91), and negative predictive value (NPV of 0.68–0.85). Overall, MuDRA models outperformed RF models and were applied to predict compounds’ irritation/corrosion potential from the Inactive Ingredient Database, which contains components present in FDA-approved drug products, and from the Cosmetic Ingredient Database, the European Commission source of information on cosmetic substances. All models built and validated in this study are publicly available at the STopTox web portal (https://stoptox.mml.unc.edu/). These models can be employed as reliable tools for identifying potential eye irritant/corrosive compounds 2021-12 2021-12-05 /pmc/articles/PMC9355119/ /pubmed/35935266 http://dx.doi.org/10.1016/j.ailsci.2021.100028 Text en https://creativecommons.org/licenses/by/3.0/igo/This is an open access article under the CC BY IGO license (http://creativecommons.org/licenses/by/3.0/igo/ (https://creativecommons.org/licenses/by/3.0/igo/) )
spellingShingle Article
Silva, Arthur C.
Borba, Joyce V.V.B.
Alves, Vinicius M.
Hall, Steven U.S.
Furnham, Nicholas
Kleinstreuer, Nicole
Muratov, Eugene
Tropsha, Alexander
Andrade, Carolina Horta
Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title_full Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title_fullStr Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title_full_unstemmed Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title_short Novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
title_sort novel computational models offer alternatives to animal testing for assessing eye irritation and corrosion potential of chemicals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355119/
https://www.ncbi.nlm.nih.gov/pubmed/35935266
http://dx.doi.org/10.1016/j.ailsci.2021.100028
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