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Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces

Nuclear magnetic resonance (NMR) spectroscopy is a key method for determining the structural dynamics of proteins in their native solution state. However, the low sensitivity of NMR typically necessitates nonphysiologically high sample concentrations, which often limit the relevance of the recorded...

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Autores principales: Epasto, Ludovica M., Che, Kateryna, Kozak, Fanny, Selimovic, Albina, Kadeřávek, Pavel, Kurzbach, Dennis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355353/
https://www.ncbi.nlm.nih.gov/pubmed/35930648
http://dx.doi.org/10.1126/sciadv.abq5179
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author Epasto, Ludovica M.
Che, Kateryna
Kozak, Fanny
Selimovic, Albina
Kadeřávek, Pavel
Kurzbach, Dennis
author_facet Epasto, Ludovica M.
Che, Kateryna
Kozak, Fanny
Selimovic, Albina
Kadeřávek, Pavel
Kurzbach, Dennis
author_sort Epasto, Ludovica M.
collection PubMed
description Nuclear magnetic resonance (NMR) spectroscopy is a key method for determining the structural dynamics of proteins in their native solution state. However, the low sensitivity of NMR typically necessitates nonphysiologically high sample concentrations, which often limit the relevance of the recorded data. We show how to use hyperpolarized water by dissolution dynamic nuclear polarization (DDNP) to acquire protein spectra at concentrations of 1 μM within seconds and with a high signal-to-noise ratio. The importance of approaching physiological concentrations is demonstrated for the vital MYC-associated factor X, which we show to switch conformations when diluted. While in vitro conditions lead to a population of the well-documented dimer, concentrations lowered by more than two orders of magnitude entail dimer dissociation and formation of a globularly folded monomer. We identified this structure by integrating DDNP with computational techniques to overcome the often-encountered constraint of DDNP of limited structural information provided by the typically detected one-dimensional spectra.
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spelling pubmed-93553532022-08-18 Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces Epasto, Ludovica M. Che, Kateryna Kozak, Fanny Selimovic, Albina Kadeřávek, Pavel Kurzbach, Dennis Sci Adv Physical and Materials Sciences Nuclear magnetic resonance (NMR) spectroscopy is a key method for determining the structural dynamics of proteins in their native solution state. However, the low sensitivity of NMR typically necessitates nonphysiologically high sample concentrations, which often limit the relevance of the recorded data. We show how to use hyperpolarized water by dissolution dynamic nuclear polarization (DDNP) to acquire protein spectra at concentrations of 1 μM within seconds and with a high signal-to-noise ratio. The importance of approaching physiological concentrations is demonstrated for the vital MYC-associated factor X, which we show to switch conformations when diluted. While in vitro conditions lead to a population of the well-documented dimer, concentrations lowered by more than two orders of magnitude entail dimer dissociation and formation of a globularly folded monomer. We identified this structure by integrating DDNP with computational techniques to overcome the often-encountered constraint of DDNP of limited structural information provided by the typically detected one-dimensional spectra. American Association for the Advancement of Science 2022-08-05 /pmc/articles/PMC9355353/ /pubmed/35930648 http://dx.doi.org/10.1126/sciadv.abq5179 Text en Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Physical and Materials Sciences
Epasto, Ludovica M.
Che, Kateryna
Kozak, Fanny
Selimovic, Albina
Kadeřávek, Pavel
Kurzbach, Dennis
Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title_full Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title_fullStr Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title_full_unstemmed Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title_short Toward protein NMR at physiological concentrations by hyperpolarized water—Finding and mapping uncharted conformational spaces
title_sort toward protein nmr at physiological concentrations by hyperpolarized water—finding and mapping uncharted conformational spaces
topic Physical and Materials Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9355353/
https://www.ncbi.nlm.nih.gov/pubmed/35930648
http://dx.doi.org/10.1126/sciadv.abq5179
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