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Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer
Active Surveillance (AS) for prostate cancer is a management option that continually monitors early disease and considers intervention if progression occurs. A robust method to incorporate “live” updates of progression risk during follow-up has hitherto been lacking. To address this, we developed a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357044/ https://www.ncbi.nlm.nih.gov/pubmed/35933478 http://dx.doi.org/10.1038/s41746-022-00659-w |
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author | Lee, Changhee Light, Alexander Saveliev, Evgeny S. van der Schaar, Mihaela Gnanapragasam, Vincent J. |
author_facet | Lee, Changhee Light, Alexander Saveliev, Evgeny S. van der Schaar, Mihaela Gnanapragasam, Vincent J. |
author_sort | Lee, Changhee |
collection | PubMed |
description | Active Surveillance (AS) for prostate cancer is a management option that continually monitors early disease and considers intervention if progression occurs. A robust method to incorporate “live” updates of progression risk during follow-up has hitherto been lacking. To address this, we developed a deep learning-based individualised longitudinal survival model using Dynamic-DeepHit-Lite (DDHL) that learns data-driven distribution of time-to-event outcomes. Further refining outputs, we used a reinforcement learning approach (Actor-Critic) for temporal predictive clustering (AC-TPC) to discover groups with similar time-to-event outcomes to support clinical utility. We applied these methods to data from 585 men on AS with longitudinal and comprehensive follow-up (median 4.4 years). Time-dependent C-indices and Brier scores were calculated and compared to Cox regression and landmarking methods. Both Cox and DDHL models including only baseline variables showed comparable C-indices but the DDHL model performance improved with additional follow-up data. With 3 years of data collection and 3 years follow-up the DDHL model had a C-index of 0.79 (±0.11) compared to 0.70 (±0.15) for landmarking Cox and 0.67 (±0.09) for baseline Cox only. Model calibration was good across all models tested. The AC-TPC method further discovered 4 distinct outcome-related temporal clusters with distinct progression trajectories. Those in the lowest risk cluster had negligible progression risk while those in the highest cluster had a 50% risk of progression by 5 years. In summary, we report a novel machine learning approach to inform personalised follow-up during active surveillance which improves predictive power with increasing data input over time. |
format | Online Article Text |
id | pubmed-9357044 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93570442022-08-08 Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer Lee, Changhee Light, Alexander Saveliev, Evgeny S. van der Schaar, Mihaela Gnanapragasam, Vincent J. NPJ Digit Med Article Active Surveillance (AS) for prostate cancer is a management option that continually monitors early disease and considers intervention if progression occurs. A robust method to incorporate “live” updates of progression risk during follow-up has hitherto been lacking. To address this, we developed a deep learning-based individualised longitudinal survival model using Dynamic-DeepHit-Lite (DDHL) that learns data-driven distribution of time-to-event outcomes. Further refining outputs, we used a reinforcement learning approach (Actor-Critic) for temporal predictive clustering (AC-TPC) to discover groups with similar time-to-event outcomes to support clinical utility. We applied these methods to data from 585 men on AS with longitudinal and comprehensive follow-up (median 4.4 years). Time-dependent C-indices and Brier scores were calculated and compared to Cox regression and landmarking methods. Both Cox and DDHL models including only baseline variables showed comparable C-indices but the DDHL model performance improved with additional follow-up data. With 3 years of data collection and 3 years follow-up the DDHL model had a C-index of 0.79 (±0.11) compared to 0.70 (±0.15) for landmarking Cox and 0.67 (±0.09) for baseline Cox only. Model calibration was good across all models tested. The AC-TPC method further discovered 4 distinct outcome-related temporal clusters with distinct progression trajectories. Those in the lowest risk cluster had negligible progression risk while those in the highest cluster had a 50% risk of progression by 5 years. In summary, we report a novel machine learning approach to inform personalised follow-up during active surveillance which improves predictive power with increasing data input over time. Nature Publishing Group UK 2022-08-06 /pmc/articles/PMC9357044/ /pubmed/35933478 http://dx.doi.org/10.1038/s41746-022-00659-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Lee, Changhee Light, Alexander Saveliev, Evgeny S. van der Schaar, Mihaela Gnanapragasam, Vincent J. Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title | Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title_full | Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title_fullStr | Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title_full_unstemmed | Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title_short | Developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
title_sort | developing machine learning algorithms for dynamic estimation of progression during active surveillance for prostate cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9357044/ https://www.ncbi.nlm.nih.gov/pubmed/35933478 http://dx.doi.org/10.1038/s41746-022-00659-w |
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