Cargando…
Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms
SLC2A3 is a ferroptosis marker engaged in transmembrane glucose transport. However, the effect of SLC2A3 on the prognosis of patients with cancer remains unclear. This study aimed to explore the prognostic implications of SLC2A3 and its underlying immune mechanisms in gastric cancer. The mRNA expres...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9358142/ https://www.ncbi.nlm.nih.gov/pubmed/35957685 http://dx.doi.org/10.3389/fgene.2022.919313 |
_version_ | 1784763869686661120 |
---|---|
author | Lin, Liubing Que, Renye Wang, Jian Zhu, Yi Liu, Xiaolin Xu, Rongzhong |
author_facet | Lin, Liubing Que, Renye Wang, Jian Zhu, Yi Liu, Xiaolin Xu, Rongzhong |
author_sort | Lin, Liubing |
collection | PubMed |
description | SLC2A3 is a ferroptosis marker engaged in transmembrane glucose transport. However, the effect of SLC2A3 on the prognosis of patients with cancer remains unclear. This study aimed to explore the prognostic implications of SLC2A3 and its underlying immune mechanisms in gastric cancer. The mRNA expression profiles and corresponding clinical data of patients with gastric cancer were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. Differentially expressed genes related to SLC2A3 were identified using the R package “limma.” Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses, gene set enrichment analysis, and gene set variation analysis were used to explore the underlying mechanisms. The protein–protein and miRNA interaction networks were analyzed using Cytoscape software. Immune cell infiltration was assessed using single-sample gene set enrichment analysis. Univariate and multivariate Cox regression analyses revealed the relationship between SLC2A3 expression and prognosis. SLC2A3 was found to be highly expressed in tumor tissues and was associated with an unfavorable prognosis in patients with gastric cancer. Functional enrichment analysis showed that SLC2A3 is related to cytokine–cytokine receptor interaction, epithelial–mesenchymal transition, T cell receptor signaling pathway, B cell receptor signaling pathway, and immune checkpoints. SLC2A3 is also involved in immune response regulation and is regulated by multiple miRNAs, including miR-195-5p, miR-106a-5p, miR-424-5p, and miR-16-5p. Univariate and multivariate Cox regression analyses indicated that SLC2A3 can be used as an independent prognostic factor for predicting the outcome in patients with gastric cancer. SLC2A3 and related miRNAs are potential prognostic biomarkers and therapeutic targets. |
format | Online Article Text |
id | pubmed-9358142 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93581422022-08-10 Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms Lin, Liubing Que, Renye Wang, Jian Zhu, Yi Liu, Xiaolin Xu, Rongzhong Front Genet Genetics SLC2A3 is a ferroptosis marker engaged in transmembrane glucose transport. However, the effect of SLC2A3 on the prognosis of patients with cancer remains unclear. This study aimed to explore the prognostic implications of SLC2A3 and its underlying immune mechanisms in gastric cancer. The mRNA expression profiles and corresponding clinical data of patients with gastric cancer were downloaded from The Cancer Genome Atlas and Gene Expression Omnibus databases. Differentially expressed genes related to SLC2A3 were identified using the R package “limma.” Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses, gene set enrichment analysis, and gene set variation analysis were used to explore the underlying mechanisms. The protein–protein and miRNA interaction networks were analyzed using Cytoscape software. Immune cell infiltration was assessed using single-sample gene set enrichment analysis. Univariate and multivariate Cox regression analyses revealed the relationship between SLC2A3 expression and prognosis. SLC2A3 was found to be highly expressed in tumor tissues and was associated with an unfavorable prognosis in patients with gastric cancer. Functional enrichment analysis showed that SLC2A3 is related to cytokine–cytokine receptor interaction, epithelial–mesenchymal transition, T cell receptor signaling pathway, B cell receptor signaling pathway, and immune checkpoints. SLC2A3 is also involved in immune response regulation and is regulated by multiple miRNAs, including miR-195-5p, miR-106a-5p, miR-424-5p, and miR-16-5p. Univariate and multivariate Cox regression analyses indicated that SLC2A3 can be used as an independent prognostic factor for predicting the outcome in patients with gastric cancer. SLC2A3 and related miRNAs are potential prognostic biomarkers and therapeutic targets. Frontiers Media S.A. 2022-07-25 /pmc/articles/PMC9358142/ /pubmed/35957685 http://dx.doi.org/10.3389/fgene.2022.919313 Text en Copyright © 2022 Lin, Que, Wang, Zhu, Liu and Xu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Lin, Liubing Que, Renye Wang, Jian Zhu, Yi Liu, Xiaolin Xu, Rongzhong Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title | Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title_full | Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title_fullStr | Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title_full_unstemmed | Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title_short | Prognostic value of the ferroptosis-related gene SLC2A3 in gastric cancer and related immune mechanisms |
title_sort | prognostic value of the ferroptosis-related gene slc2a3 in gastric cancer and related immune mechanisms |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9358142/ https://www.ncbi.nlm.nih.gov/pubmed/35957685 http://dx.doi.org/10.3389/fgene.2022.919313 |
work_keys_str_mv | AT linliubing prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms AT querenye prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms AT wangjian prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms AT zhuyi prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms AT liuxiaolin prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms AT xurongzhong prognosticvalueoftheferroptosisrelatedgeneslc2a3ingastriccancerandrelatedimmunemechanisms |