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A simple DEB-based ecosystem model
A minimum stoichiometric carbon and nitrogen model of an entire ecosystem based on Dynamic Energy Budget (DEB) theory is presented. The ecosystem contains nutrients, producers, consumers, decomposers and detritus. All three living groups consist of somatic structure and either one (consumers and dec...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9358698/ https://www.ncbi.nlm.nih.gov/pubmed/35949258 http://dx.doi.org/10.1093/conphys/coac057 |
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author | van der Meer, Jaap Hin, Vincent van Oort, Pepijn van de Wolfshaar, Karen E |
author_facet | van der Meer, Jaap Hin, Vincent van Oort, Pepijn van de Wolfshaar, Karen E |
author_sort | van der Meer, Jaap |
collection | PubMed |
description | A minimum stoichiometric carbon and nitrogen model of an entire ecosystem based on Dynamic Energy Budget (DEB) theory is presented. The ecosystem contains nutrients, producers, consumers, decomposers and detritus. All three living groups consist of somatic structure and either one (consumers and decomposers) or two (producers) reserve compartments, hence the living matter is described by seven state variables. Four types of detritus are distinguished. As the system is closed for matter, the dynamics of the nutrients carbon dioxide and ammonium follow automatically from the dynamics of the other 11 state variables. All DEB organisms in the model are V1-morphs, which means that surface area of each organism is proportional to volume. The resulting ontogenetic symmetry implies that complicated modelling of size structure is not required. The DEB V1-morph model is explained in detail, and the same holds for the idea of synthesizing units, which plays a key role in DEB modelling. First results of system dynamics are presented. |
format | Online Article Text |
id | pubmed-9358698 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-93586982022-08-09 A simple DEB-based ecosystem model van der Meer, Jaap Hin, Vincent van Oort, Pepijn van de Wolfshaar, Karen E Conserv Physiol Research Article A minimum stoichiometric carbon and nitrogen model of an entire ecosystem based on Dynamic Energy Budget (DEB) theory is presented. The ecosystem contains nutrients, producers, consumers, decomposers and detritus. All three living groups consist of somatic structure and either one (consumers and decomposers) or two (producers) reserve compartments, hence the living matter is described by seven state variables. Four types of detritus are distinguished. As the system is closed for matter, the dynamics of the nutrients carbon dioxide and ammonium follow automatically from the dynamics of the other 11 state variables. All DEB organisms in the model are V1-morphs, which means that surface area of each organism is proportional to volume. The resulting ontogenetic symmetry implies that complicated modelling of size structure is not required. The DEB V1-morph model is explained in detail, and the same holds for the idea of synthesizing units, which plays a key role in DEB modelling. First results of system dynamics are presented. Oxford University Press 2022-08-06 /pmc/articles/PMC9358698/ /pubmed/35949258 http://dx.doi.org/10.1093/conphys/coac057 Text en © The Author(s) 2022. Published by Oxford University Press and the Society for Experimental Biology. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article van der Meer, Jaap Hin, Vincent van Oort, Pepijn van de Wolfshaar, Karen E A simple DEB-based ecosystem model |
title | A simple DEB-based ecosystem model |
title_full | A simple DEB-based ecosystem model |
title_fullStr | A simple DEB-based ecosystem model |
title_full_unstemmed | A simple DEB-based ecosystem model |
title_short | A simple DEB-based ecosystem model |
title_sort | simple deb-based ecosystem model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9358698/ https://www.ncbi.nlm.nih.gov/pubmed/35949258 http://dx.doi.org/10.1093/conphys/coac057 |
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