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GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()

In early 2020, the global spread of the COVID-19 has presented the world with a serious health crisis. Due to the large number of infected patients, automatic segmentation of lung infections using computed tomography (CT) images has great potential to enhance traditional medical strategies. However,...

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Detalles Bibliográficos
Autores principales: Fan, Chaodong, Zeng, Zhenhuan, Xiao, Leyi, Qu, Xilong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9359771/
https://www.ncbi.nlm.nih.gov/pubmed/35966970
http://dx.doi.org/10.1016/j.patcog.2022.108963
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author Fan, Chaodong
Zeng, Zhenhuan
Xiao, Leyi
Qu, Xilong
author_facet Fan, Chaodong
Zeng, Zhenhuan
Xiao, Leyi
Qu, Xilong
author_sort Fan, Chaodong
collection PubMed
description In early 2020, the global spread of the COVID-19 has presented the world with a serious health crisis. Due to the large number of infected patients, automatic segmentation of lung infections using computed tomography (CT) images has great potential to enhance traditional medical strategies. However, the segmentation of infected regions in CT slices still faces many challenges. Specially, the most core problem is the high variability of infection characteristics and the low contrast between the infected and the normal regions. This problem leads to fuzzy regions in lung CT segmentation. To address this problem, we have designed a novel global feature network(GFNet) for COVID-19 lung infections: VGG16 as backbone, we design a Edge-guidance module(Eg) that fuses the features of each layer. First, features are extracted by reverse attention module and Eg is combined with it. This series of steps enables each layer to fully extract boundary details that are difficult to be noticed by previous models, thus solving the fuzzy problem of infected regions. The multi-layer output features are fused into the final output to finally achieve automatic and accurate segmentation of infected areas. We compared the traditional medical segmentation networks, UNet, UNet++, the latest model Inf-Net, and methods of few shot learning field. Experiments show that our model is superior to the above models in Dice, Sensitivity, Specificity and other evaluation metrics, and our segmentation results are clear and accurate from the visual effect, which proves the effectiveness of GFNet. In addition, we verify the generalization ability of GFNet on another “never seen” dataset, and the results prove that our model still has better generalization ability than the above model. Our code has been shared at https://github.com/zengzhenhuan/GFNet.
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spelling pubmed-93597712022-08-09 GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features() Fan, Chaodong Zeng, Zhenhuan Xiao, Leyi Qu, Xilong Pattern Recognit Article In early 2020, the global spread of the COVID-19 has presented the world with a serious health crisis. Due to the large number of infected patients, automatic segmentation of lung infections using computed tomography (CT) images has great potential to enhance traditional medical strategies. However, the segmentation of infected regions in CT slices still faces many challenges. Specially, the most core problem is the high variability of infection characteristics and the low contrast between the infected and the normal regions. This problem leads to fuzzy regions in lung CT segmentation. To address this problem, we have designed a novel global feature network(GFNet) for COVID-19 lung infections: VGG16 as backbone, we design a Edge-guidance module(Eg) that fuses the features of each layer. First, features are extracted by reverse attention module and Eg is combined with it. This series of steps enables each layer to fully extract boundary details that are difficult to be noticed by previous models, thus solving the fuzzy problem of infected regions. The multi-layer output features are fused into the final output to finally achieve automatic and accurate segmentation of infected areas. We compared the traditional medical segmentation networks, UNet, UNet++, the latest model Inf-Net, and methods of few shot learning field. Experiments show that our model is superior to the above models in Dice, Sensitivity, Specificity and other evaluation metrics, and our segmentation results are clear and accurate from the visual effect, which proves the effectiveness of GFNet. In addition, we verify the generalization ability of GFNet on another “never seen” dataset, and the results prove that our model still has better generalization ability than the above model. Our code has been shared at https://github.com/zengzhenhuan/GFNet. Elsevier Ltd. 2022-12 2022-08-08 /pmc/articles/PMC9359771/ /pubmed/35966970 http://dx.doi.org/10.1016/j.patcog.2022.108963 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Fan, Chaodong
Zeng, Zhenhuan
Xiao, Leyi
Qu, Xilong
GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title_full GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title_fullStr GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title_full_unstemmed GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title_short GFNet: Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features()
title_sort gfnet: automatic segmentation of covid-19 lung infection regions using ct images based on boundary features()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9359771/
https://www.ncbi.nlm.nih.gov/pubmed/35966970
http://dx.doi.org/10.1016/j.patcog.2022.108963
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