Cargando…
Case report: evaluation of an open-source synthetic data platform for simulation studies
Simulation is a mainstay of comparative- and cost-effectiveness research when empirical data are not available. The Synthea platform, originally designed for generating realistically coded longitudinal health records for software testing, implements data generation models specified in publicly contr...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9360775/ https://www.ncbi.nlm.nih.gov/pubmed/35958672 http://dx.doi.org/10.1093/jamiaopen/ooac067 |
_version_ | 1784764398400700416 |
---|---|
author | Meeker, Daniella Kallem, Crystal Heras, Yan Garcia, Stephanie Thompson, Casey |
author_facet | Meeker, Daniella Kallem, Crystal Heras, Yan Garcia, Stephanie Thompson, Casey |
author_sort | Meeker, Daniella |
collection | PubMed |
description | Simulation is a mainstay of comparative- and cost-effectiveness research when empirical data are not available. The Synthea platform, originally designed for generating realistically coded longitudinal health records for software testing, implements data generation models specified in publicly contributed modules representing patients’ life cycle and disease and treatment progression. We test the hypothesis that Synthea can be used for simulation studies that draw parameters from observational studies and randomized trials. We benchmarked the results and assessed the effort required to create a Synthea module that replicates a recently published cost-effectiveness simulation comparing levofloxacin prophylaxis to usual care for leukemia. A module was iteratively developed using published parameters from the original study; we replicated the initial conditions and simulation endpoints of demographics, health events, costs, and mortality. We compare Synthea’s Generic Module Framework to platforms designed for simulation and show that Synthea can be used, with modifications, for some types of simulation studies. |
format | Online Article Text |
id | pubmed-9360775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-93607752022-08-10 Case report: evaluation of an open-source synthetic data platform for simulation studies Meeker, Daniella Kallem, Crystal Heras, Yan Garcia, Stephanie Thompson, Casey JAMIA Open Case Report Simulation is a mainstay of comparative- and cost-effectiveness research when empirical data are not available. The Synthea platform, originally designed for generating realistically coded longitudinal health records for software testing, implements data generation models specified in publicly contributed modules representing patients’ life cycle and disease and treatment progression. We test the hypothesis that Synthea can be used for simulation studies that draw parameters from observational studies and randomized trials. We benchmarked the results and assessed the effort required to create a Synthea module that replicates a recently published cost-effectiveness simulation comparing levofloxacin prophylaxis to usual care for leukemia. A module was iteratively developed using published parameters from the original study; we replicated the initial conditions and simulation endpoints of demographics, health events, costs, and mortality. We compare Synthea’s Generic Module Framework to platforms designed for simulation and show that Synthea can be used, with modifications, for some types of simulation studies. Oxford University Press 2022-08-08 /pmc/articles/PMC9360775/ /pubmed/35958672 http://dx.doi.org/10.1093/jamiaopen/ooac067 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Case Report Meeker, Daniella Kallem, Crystal Heras, Yan Garcia, Stephanie Thompson, Casey Case report: evaluation of an open-source synthetic data platform for simulation studies |
title | Case report: evaluation of an open-source synthetic data platform for simulation studies |
title_full | Case report: evaluation of an open-source synthetic data platform for simulation studies |
title_fullStr | Case report: evaluation of an open-source synthetic data platform for simulation studies |
title_full_unstemmed | Case report: evaluation of an open-source synthetic data platform for simulation studies |
title_short | Case report: evaluation of an open-source synthetic data platform for simulation studies |
title_sort | case report: evaluation of an open-source synthetic data platform for simulation studies |
topic | Case Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9360775/ https://www.ncbi.nlm.nih.gov/pubmed/35958672 http://dx.doi.org/10.1093/jamiaopen/ooac067 |
work_keys_str_mv | AT meekerdaniella casereportevaluationofanopensourcesyntheticdataplatformforsimulationstudies AT kallemcrystal casereportevaluationofanopensourcesyntheticdataplatformforsimulationstudies AT herasyan casereportevaluationofanopensourcesyntheticdataplatformforsimulationstudies AT garciastephanie casereportevaluationofanopensourcesyntheticdataplatformforsimulationstudies AT thompsoncasey casereportevaluationofanopensourcesyntheticdataplatformforsimulationstudies |