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V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants

An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical, biogeographical and ecological studies. Here, we update and enlarge this package, which is now called ‘V.PhyloMaker2’. With V.PhyloMaker2, one can generate a phylogenetic tree fo...

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Detalles Bibliográficos
Autores principales: Jin, Yi, Qian, Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Kunming Institute of Botany, Chinese Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9363651/
https://www.ncbi.nlm.nih.gov/pubmed/35967255
http://dx.doi.org/10.1016/j.pld.2022.05.005
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author Jin, Yi
Qian, Hong
author_facet Jin, Yi
Qian, Hong
author_sort Jin, Yi
collection PubMed
description An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical, biogeographical and ecological studies. Here, we update and enlarge this package, which is now called ‘V.PhyloMaker2’. With V.PhyloMaker2, one can generate a phylogenetic tree for vascular plants based on one of three different botanical nomenclature systems. V.PhyloMaker2 can generate phylogenies for very large species lists (the largest species list that we tested included 365,198 species). V.PhyloMaker2 generates phylogenies at a fast speed. We provide an example (including a sample species list and an R script to run it) in this paper to show how to use V.PhyloMaker2 to generate phylogenetic trees.
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spelling pubmed-93636512022-08-11 V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants Jin, Yi Qian, Hong Plant Divers Short Communication An earlier version of V.PhyloMaker has been broadly used to generate phylogenetic trees of vascular plants for botanical, biogeographical and ecological studies. Here, we update and enlarge this package, which is now called ‘V.PhyloMaker2’. With V.PhyloMaker2, one can generate a phylogenetic tree for vascular plants based on one of three different botanical nomenclature systems. V.PhyloMaker2 can generate phylogenies for very large species lists (the largest species list that we tested included 365,198 species). V.PhyloMaker2 generates phylogenies at a fast speed. We provide an example (including a sample species list and an R script to run it) in this paper to show how to use V.PhyloMaker2 to generate phylogenetic trees. Kunming Institute of Botany, Chinese Academy of Sciences 2022-05-27 /pmc/articles/PMC9363651/ /pubmed/35967255 http://dx.doi.org/10.1016/j.pld.2022.05.005 Text en © 2022 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Short Communication
Jin, Yi
Qian, Hong
V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title_full V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title_fullStr V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title_full_unstemmed V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title_short V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants
title_sort v.phylomaker2: an updated and enlarged r package that can generate very large phylogenies for vascular plants
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9363651/
https://www.ncbi.nlm.nih.gov/pubmed/35967255
http://dx.doi.org/10.1016/j.pld.2022.05.005
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