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mapDATAge: a ShinyR package to chart ancient DNA data through space and time
SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time....
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364369/ https://www.ncbi.nlm.nih.gov/pubmed/35771611 http://dx.doi.org/10.1093/bioinformatics/btac425 |
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author | Liu, Xuexue Orlando, Ludovic |
author_facet | Liu, Xuexue Orlando, Ludovic |
author_sort | Liu, Xuexue |
collection | PubMed |
description | SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time. mapDATAge enhances collaborative data sharing while assisting the assessment and reporting of spatiotemporal patterns of genetic changes. AVAILABILITY AND IMPLEMENTATION: mapDATAge is a Shiny R application designed for exploring spatiotemporal patterns in ancient DNA data through a graphical user interface. It is freely available under GNU Public License in Github: https://github.com/xuefenfei712/mapDATAge. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-9364369 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-93643692022-08-11 mapDATAge: a ShinyR package to chart ancient DNA data through space and time Liu, Xuexue Orlando, Ludovic Bioinformatics Original Papers SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time. mapDATAge enhances collaborative data sharing while assisting the assessment and reporting of spatiotemporal patterns of genetic changes. AVAILABILITY AND IMPLEMENTATION: mapDATAge is a Shiny R application designed for exploring spatiotemporal patterns in ancient DNA data through a graphical user interface. It is freely available under GNU Public License in Github: https://github.com/xuefenfei712/mapDATAge. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2022-06-30 /pmc/articles/PMC9364369/ /pubmed/35771611 http://dx.doi.org/10.1093/bioinformatics/btac425 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Original Papers Liu, Xuexue Orlando, Ludovic mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title | mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title_full | mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title_fullStr | mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title_full_unstemmed | mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title_short | mapDATAge: a ShinyR package to chart ancient DNA data through space and time |
title_sort | mapdatage: a shinyr package to chart ancient dna data through space and time |
topic | Original Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364369/ https://www.ncbi.nlm.nih.gov/pubmed/35771611 http://dx.doi.org/10.1093/bioinformatics/btac425 |
work_keys_str_mv | AT liuxuexue mapdatageashinyrpackagetochartancientdnadatathroughspaceandtime AT orlandoludovic mapdatageashinyrpackagetochartancientdnadatathroughspaceandtime |