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mapDATAge: a ShinyR package to chart ancient DNA data through space and time

SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time....

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Detalles Bibliográficos
Autores principales: Liu, Xuexue, Orlando, Ludovic
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364369/
https://www.ncbi.nlm.nih.gov/pubmed/35771611
http://dx.doi.org/10.1093/bioinformatics/btac425
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author Liu, Xuexue
Orlando, Ludovic
author_facet Liu, Xuexue
Orlando, Ludovic
author_sort Liu, Xuexue
collection PubMed
description SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time. mapDATAge enhances collaborative data sharing while assisting the assessment and reporting of spatiotemporal patterns of genetic changes. AVAILABILITY AND IMPLEMENTATION: mapDATAge is a Shiny R application designed for exploring spatiotemporal patterns in ancient DNA data through a graphical user interface. It is freely available under GNU Public License in Github: https://github.com/xuefenfei712/mapDATAge. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-93643692022-08-11 mapDATAge: a ShinyR package to chart ancient DNA data through space and time Liu, Xuexue Orlando, Ludovic Bioinformatics Original Papers SUMMARY: Ancient DNA datasets are increasingly difficult to visualize for users lacking computational experience. Here, we describe mapDATAge, which aims to provide user-friendly automated modules for the interactive mapping of allele, haplogroup and/or ancestry distributions through space and time. mapDATAge enhances collaborative data sharing while assisting the assessment and reporting of spatiotemporal patterns of genetic changes. AVAILABILITY AND IMPLEMENTATION: mapDATAge is a Shiny R application designed for exploring spatiotemporal patterns in ancient DNA data through a graphical user interface. It is freely available under GNU Public License in Github: https://github.com/xuefenfei712/mapDATAge. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2022-06-30 /pmc/articles/PMC9364369/ /pubmed/35771611 http://dx.doi.org/10.1093/bioinformatics/btac425 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Original Papers
Liu, Xuexue
Orlando, Ludovic
mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title_full mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title_fullStr mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title_full_unstemmed mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title_short mapDATAge: a ShinyR package to chart ancient DNA data through space and time
title_sort mapdatage: a shinyr package to chart ancient dna data through space and time
topic Original Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364369/
https://www.ncbi.nlm.nih.gov/pubmed/35771611
http://dx.doi.org/10.1093/bioinformatics/btac425
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AT orlandoludovic mapdatageashinyrpackagetochartancientdnadatathroughspaceandtime