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The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)

Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position...

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Autores principales: Bai, Xuehui, Zheng, Hongyu, Huang, Xing, Li, Jinhong, Guo, Tieying, Luo, Qin, Zhang, Zhirun, Wu, Weihuai, Yi, Kexian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364704/
https://www.ncbi.nlm.nih.gov/pubmed/35965645
http://dx.doi.org/10.1080/23802359.2022.2107459
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author Bai, Xuehui
Zheng, Hongyu
Huang, Xing
Li, Jinhong
Guo, Tieying
Luo, Qin
Zhang, Zhirun
Wu, Weihuai
Yi, Kexian
author_facet Bai, Xuehui
Zheng, Hongyu
Huang, Xing
Li, Jinhong
Guo, Tieying
Luo, Qin
Zhang, Zhirun
Wu, Weihuai
Yi, Kexian
author_sort Bai, Xuehui
collection PubMed
description Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position and phylogenetic relationship of C. liberica at the chloroplast (cp) genome level. Thus, we successfully assembled its cp genome. The full length is 154,799 bp with a GC content of 37.48%. We have further annotated the cp genome and predicted 85 protein-coding genes together with 8 rRNAs and 37 tRNAs. Furthermore, a large single copy region (LSC), a small single copy region (SSC), an inverted repeat region a (IRa) and an inverted repeat region b (IRb) are identified with lengths of 84,868 bp, 18,121 bp, 25,905 bp and 25,905 bp, respectively. The phylogenetic tree indicates that C. liberica is closely related to C. canephora, which is consistent with a previous result obtained from genotyping‐by‐sequencing.
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spelling pubmed-93647042022-08-11 The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) Bai, Xuehui Zheng, Hongyu Huang, Xing Li, Jinhong Guo, Tieying Luo, Qin Zhang, Zhirun Wu, Weihuai Yi, Kexian Mitochondrial DNA B Resour Plastome Announcement Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position and phylogenetic relationship of C. liberica at the chloroplast (cp) genome level. Thus, we successfully assembled its cp genome. The full length is 154,799 bp with a GC content of 37.48%. We have further annotated the cp genome and predicted 85 protein-coding genes together with 8 rRNAs and 37 tRNAs. Furthermore, a large single copy region (LSC), a small single copy region (SSC), an inverted repeat region a (IRa) and an inverted repeat region b (IRb) are identified with lengths of 84,868 bp, 18,121 bp, 25,905 bp and 25,905 bp, respectively. The phylogenetic tree indicates that C. liberica is closely related to C. canephora, which is consistent with a previous result obtained from genotyping‐by‐sequencing. Taylor & Francis 2022-08-08 /pmc/articles/PMC9364704/ /pubmed/35965645 http://dx.doi.org/10.1080/23802359.2022.2107459 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Bai, Xuehui
Zheng, Hongyu
Huang, Xing
Li, Jinhong
Guo, Tieying
Luo, Qin
Zhang, Zhirun
Wu, Weihuai
Yi, Kexian
The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title_full The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title_fullStr The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title_full_unstemmed The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title_short The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
title_sort complete chloroplast genome of coffea liberica (gentianales: rubiaceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364704/
https://www.ncbi.nlm.nih.gov/pubmed/35965645
http://dx.doi.org/10.1080/23802359.2022.2107459
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