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The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae)
Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364704/ https://www.ncbi.nlm.nih.gov/pubmed/35965645 http://dx.doi.org/10.1080/23802359.2022.2107459 |
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author | Bai, Xuehui Zheng, Hongyu Huang, Xing Li, Jinhong Guo, Tieying Luo, Qin Zhang, Zhirun Wu, Weihuai Yi, Kexian |
author_facet | Bai, Xuehui Zheng, Hongyu Huang, Xing Li, Jinhong Guo, Tieying Luo, Qin Zhang, Zhirun Wu, Weihuai Yi, Kexian |
author_sort | Bai, Xuehui |
collection | PubMed |
description | Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position and phylogenetic relationship of C. liberica at the chloroplast (cp) genome level. Thus, we successfully assembled its cp genome. The full length is 154,799 bp with a GC content of 37.48%. We have further annotated the cp genome and predicted 85 protein-coding genes together with 8 rRNAs and 37 tRNAs. Furthermore, a large single copy region (LSC), a small single copy region (SSC), an inverted repeat region a (IRa) and an inverted repeat region b (IRb) are identified with lengths of 84,868 bp, 18,121 bp, 25,905 bp and 25,905 bp, respectively. The phylogenetic tree indicates that C. liberica is closely related to C. canephora, which is consistent with a previous result obtained from genotyping‐by‐sequencing. |
format | Online Article Text |
id | pubmed-9364704 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-93647042022-08-11 The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) Bai, Xuehui Zheng, Hongyu Huang, Xing Li, Jinhong Guo, Tieying Luo, Qin Zhang, Zhirun Wu, Weihuai Yi, Kexian Mitochondrial DNA B Resour Plastome Announcement Coffee is one of the most popular beverages around the world. As one of the best-known coffee species, Liberian coffee (Coffea liberica Bull ex Hiern 1876) has a high resistance to leaf rust, a devasting disease caused by Hemileia vastatrix. However, there are few reports on the systematic position and phylogenetic relationship of C. liberica at the chloroplast (cp) genome level. Thus, we successfully assembled its cp genome. The full length is 154,799 bp with a GC content of 37.48%. We have further annotated the cp genome and predicted 85 protein-coding genes together with 8 rRNAs and 37 tRNAs. Furthermore, a large single copy region (LSC), a small single copy region (SSC), an inverted repeat region a (IRa) and an inverted repeat region b (IRb) are identified with lengths of 84,868 bp, 18,121 bp, 25,905 bp and 25,905 bp, respectively. The phylogenetic tree indicates that C. liberica is closely related to C. canephora, which is consistent with a previous result obtained from genotyping‐by‐sequencing. Taylor & Francis 2022-08-08 /pmc/articles/PMC9364704/ /pubmed/35965645 http://dx.doi.org/10.1080/23802359.2022.2107459 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Bai, Xuehui Zheng, Hongyu Huang, Xing Li, Jinhong Guo, Tieying Luo, Qin Zhang, Zhirun Wu, Weihuai Yi, Kexian The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title | The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title_full | The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title_fullStr | The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title_full_unstemmed | The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title_short | The complete chloroplast genome of Coffea liberica (Gentianales: Rubiaceae) |
title_sort | complete chloroplast genome of coffea liberica (gentianales: rubiaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364704/ https://www.ncbi.nlm.nih.gov/pubmed/35965645 http://dx.doi.org/10.1080/23802359.2022.2107459 |
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