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Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the co...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Ltd.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364919/ https://www.ncbi.nlm.nih.gov/pubmed/35965635 http://dx.doi.org/10.1016/j.procbio.2022.08.010 |
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author | He, Lijun Xie, Zhiyang Long, Xing Zhang, Chaopeng He, Chengyun Zhao, Boyang Qi, Fei Zhang, Nan |
author_facet | He, Lijun Xie, Zhiyang Long, Xing Zhang, Chaopeng He, Chengyun Zhao, Boyang Qi, Fei Zhang, Nan |
author_sort | He, Lijun |
collection | PubMed |
description | The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the conductance information of these six short RNA oligonucleotides groups by construct RNA: DNA hybrids. The electronic characteristics are investigated by the combination of density functional theory and non-equilibrium Green's function formulation with decoherence. We found that conductance is very sensitive to small changes in virus sequence. Among the 6 mutations in the Delta S region, D950N shows the largest change in relative conductance, reaching a surprising 4104.75%. These results provide new insights into the Delta variant from the perspective of its electrical properties. This may be a new method to distinguish virus variation and possess great research prospects. |
format | Online Article Text |
id | pubmed-9364919 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93649192022-08-10 Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) He, Lijun Xie, Zhiyang Long, Xing Zhang, Chaopeng He, Chengyun Zhao, Boyang Qi, Fei Zhang, Nan Process Biochem Article The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the conductance information of these six short RNA oligonucleotides groups by construct RNA: DNA hybrids. The electronic characteristics are investigated by the combination of density functional theory and non-equilibrium Green's function formulation with decoherence. We found that conductance is very sensitive to small changes in virus sequence. Among the 6 mutations in the Delta S region, D950N shows the largest change in relative conductance, reaching a surprising 4104.75%. These results provide new insights into the Delta variant from the perspective of its electrical properties. This may be a new method to distinguish virus variation and possess great research prospects. Elsevier Ltd. 2022-10 2022-08-10 /pmc/articles/PMC9364919/ /pubmed/35965635 http://dx.doi.org/10.1016/j.procbio.2022.08.010 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article He, Lijun Xie, Zhiyang Long, Xing Zhang, Chaopeng He, Chengyun Zhao, Boyang Qi, Fei Zhang, Nan Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title | Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title_full | Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title_fullStr | Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title_full_unstemmed | Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title_short | Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) |
title_sort | charge transport properties of sars-cov-2 delta variant (b.1.617.2) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364919/ https://www.ncbi.nlm.nih.gov/pubmed/35965635 http://dx.doi.org/10.1016/j.procbio.2022.08.010 |
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