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Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)

The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the co...

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Autores principales: He, Lijun, Xie, Zhiyang, Long, Xing, Zhang, Chaopeng, He, Chengyun, Zhao, Boyang, Qi, Fei, Zhang, Nan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364919/
https://www.ncbi.nlm.nih.gov/pubmed/35965635
http://dx.doi.org/10.1016/j.procbio.2022.08.010
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author He, Lijun
Xie, Zhiyang
Long, Xing
Zhang, Chaopeng
He, Chengyun
Zhao, Boyang
Qi, Fei
Zhang, Nan
author_facet He, Lijun
Xie, Zhiyang
Long, Xing
Zhang, Chaopeng
He, Chengyun
Zhao, Boyang
Qi, Fei
Zhang, Nan
author_sort He, Lijun
collection PubMed
description The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the conductance information of these six short RNA oligonucleotides groups by construct RNA: DNA hybrids. The electronic characteristics are investigated by the combination of density functional theory and non-equilibrium Green's function formulation with decoherence. We found that conductance is very sensitive to small changes in virus sequence. Among the 6 mutations in the Delta S region, D950N shows the largest change in relative conductance, reaching a surprising 4104.75%. These results provide new insights into the Delta variant from the perspective of its electrical properties. This may be a new method to distinguish virus variation and possess great research prospects.
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spelling pubmed-93649192022-08-10 Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2) He, Lijun Xie, Zhiyang Long, Xing Zhang, Chaopeng He, Chengyun Zhao, Boyang Qi, Fei Zhang, Nan Process Biochem Article The B.1.617.2 (Delta) variant of concern is causing a new wave of infections in many countries. In order to better understand the changes of the SARS-CoV-2 mutation at the genetic level, we selected six mutations in the S region of the Delta variant compared with the native SARS-CoV-2 and get the conductance information of these six short RNA oligonucleotides groups by construct RNA: DNA hybrids. The electronic characteristics are investigated by the combination of density functional theory and non-equilibrium Green's function formulation with decoherence. We found that conductance is very sensitive to small changes in virus sequence. Among the 6 mutations in the Delta S region, D950N shows the largest change in relative conductance, reaching a surprising 4104.75%. These results provide new insights into the Delta variant from the perspective of its electrical properties. This may be a new method to distinguish virus variation and possess great research prospects. Elsevier Ltd. 2022-10 2022-08-10 /pmc/articles/PMC9364919/ /pubmed/35965635 http://dx.doi.org/10.1016/j.procbio.2022.08.010 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
He, Lijun
Xie, Zhiyang
Long, Xing
Zhang, Chaopeng
He, Chengyun
Zhao, Boyang
Qi, Fei
Zhang, Nan
Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title_full Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title_fullStr Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title_full_unstemmed Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title_short Charge transport properties of SARS-CoV-2 Delta variant (B.1.617.2)
title_sort charge transport properties of sars-cov-2 delta variant (b.1.617.2)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9364919/
https://www.ncbi.nlm.nih.gov/pubmed/35965635
http://dx.doi.org/10.1016/j.procbio.2022.08.010
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