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Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365562/ https://www.ncbi.nlm.nih.gov/pubmed/35835721 http://dx.doi.org/10.18632/aging.204176 |
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author | Xiang, Zhiping Zhou, Xingguo Mranda, Geofrey Mahiki Xue, Ying Wang, Yu Wei, Tian Liu, Junjian Ding, Yinlu |
author_facet | Xiang, Zhiping Zhou, Xingguo Mranda, Geofrey Mahiki Xue, Ying Wang, Yu Wei, Tian Liu, Junjian Ding, Yinlu |
author_sort | Xiang, Zhiping |
collection | PubMed |
description | Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great extent. Although researchers have done a lot of research on GC in recent years, the relationship between the competing endogenous RNA (ceRNA) network of ferroptosis-related genes and the GC remains to be explored. Therefore, the research done in this paper has become particularly important. Download the expression data and clinical survival data about stomach adenocarcinoma from UCSC Xena and The Cancer Genome Atlas (TCGA) platform. Using bioinformatics tools to screen lncRNAs, miRNAs and mRNAs that are differentially expressed in GC samples and normal samples and related to the prognosis of GC. Then, screening lncRNAs, miRNAs and mRNAs with targeted relationships from the Starbase database. Subsequently, correlation analysis and survival analysis were carried out respectively. Finally, we get a ceRNA network related to the prognosis of GC patients. Cell experiments confirmed the results obtained by bioinformatics. This is critical for the discovery of the diagnosis, prognosis biomarkers and treatment targets. |
format | Online Article Text |
id | pubmed-9365562 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-93655622022-08-11 Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer Xiang, Zhiping Zhou, Xingguo Mranda, Geofrey Mahiki Xue, Ying Wang, Yu Wei, Tian Liu, Junjian Ding, Yinlu Aging (Albany NY) Research Paper Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great extent. Although researchers have done a lot of research on GC in recent years, the relationship between the competing endogenous RNA (ceRNA) network of ferroptosis-related genes and the GC remains to be explored. Therefore, the research done in this paper has become particularly important. Download the expression data and clinical survival data about stomach adenocarcinoma from UCSC Xena and The Cancer Genome Atlas (TCGA) platform. Using bioinformatics tools to screen lncRNAs, miRNAs and mRNAs that are differentially expressed in GC samples and normal samples and related to the prognosis of GC. Then, screening lncRNAs, miRNAs and mRNAs with targeted relationships from the Starbase database. Subsequently, correlation analysis and survival analysis were carried out respectively. Finally, we get a ceRNA network related to the prognosis of GC patients. Cell experiments confirmed the results obtained by bioinformatics. This is critical for the discovery of the diagnosis, prognosis biomarkers and treatment targets. Impact Journals 2022-07-14 /pmc/articles/PMC9365562/ /pubmed/35835721 http://dx.doi.org/10.18632/aging.204176 Text en Copyright: © 2022 Xiang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Xiang, Zhiping Zhou, Xingguo Mranda, Geofrey Mahiki Xue, Ying Wang, Yu Wei, Tian Liu, Junjian Ding, Yinlu Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title | Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title_full | Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title_fullStr | Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title_full_unstemmed | Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title_short | Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer |
title_sort | identification of the ferroptosis-related cerna network related to prognosis and tumor immunity for gastric cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365562/ https://www.ncbi.nlm.nih.gov/pubmed/35835721 http://dx.doi.org/10.18632/aging.204176 |
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