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Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer

Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great...

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Autores principales: Xiang, Zhiping, Zhou, Xingguo, Mranda, Geofrey Mahiki, Xue, Ying, Wang, Yu, Wei, Tian, Liu, Junjian, Ding, Yinlu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365562/
https://www.ncbi.nlm.nih.gov/pubmed/35835721
http://dx.doi.org/10.18632/aging.204176
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author Xiang, Zhiping
Zhou, Xingguo
Mranda, Geofrey Mahiki
Xue, Ying
Wang, Yu
Wei, Tian
Liu, Junjian
Ding, Yinlu
author_facet Xiang, Zhiping
Zhou, Xingguo
Mranda, Geofrey Mahiki
Xue, Ying
Wang, Yu
Wei, Tian
Liu, Junjian
Ding, Yinlu
author_sort Xiang, Zhiping
collection PubMed
description Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great extent. Although researchers have done a lot of research on GC in recent years, the relationship between the competing endogenous RNA (ceRNA) network of ferroptosis-related genes and the GC remains to be explored. Therefore, the research done in this paper has become particularly important. Download the expression data and clinical survival data about stomach adenocarcinoma from UCSC Xena and The Cancer Genome Atlas (TCGA) platform. Using bioinformatics tools to screen lncRNAs, miRNAs and mRNAs that are differentially expressed in GC samples and normal samples and related to the prognosis of GC. Then, screening lncRNAs, miRNAs and mRNAs with targeted relationships from the Starbase database. Subsequently, correlation analysis and survival analysis were carried out respectively. Finally, we get a ceRNA network related to the prognosis of GC patients. Cell experiments confirmed the results obtained by bioinformatics. This is critical for the discovery of the diagnosis, prognosis biomarkers and treatment targets.
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spelling pubmed-93655622022-08-11 Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer Xiang, Zhiping Zhou, Xingguo Mranda, Geofrey Mahiki Xue, Ying Wang, Yu Wei, Tian Liu, Junjian Ding, Yinlu Aging (Albany NY) Research Paper Gastric cancer (GC) is a highly invasive course and has a very poor prognosis. Because there are no obvious symptoms in the early stage, most patients with GC are diagnosed in the late stage. The effective diagnosis, prognosis biomarkers and treatment targets of GC can solve this problem to a great extent. Although researchers have done a lot of research on GC in recent years, the relationship between the competing endogenous RNA (ceRNA) network of ferroptosis-related genes and the GC remains to be explored. Therefore, the research done in this paper has become particularly important. Download the expression data and clinical survival data about stomach adenocarcinoma from UCSC Xena and The Cancer Genome Atlas (TCGA) platform. Using bioinformatics tools to screen lncRNAs, miRNAs and mRNAs that are differentially expressed in GC samples and normal samples and related to the prognosis of GC. Then, screening lncRNAs, miRNAs and mRNAs with targeted relationships from the Starbase database. Subsequently, correlation analysis and survival analysis were carried out respectively. Finally, we get a ceRNA network related to the prognosis of GC patients. Cell experiments confirmed the results obtained by bioinformatics. This is critical for the discovery of the diagnosis, prognosis biomarkers and treatment targets. Impact Journals 2022-07-14 /pmc/articles/PMC9365562/ /pubmed/35835721 http://dx.doi.org/10.18632/aging.204176 Text en Copyright: © 2022 Xiang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Xiang, Zhiping
Zhou, Xingguo
Mranda, Geofrey Mahiki
Xue, Ying
Wang, Yu
Wei, Tian
Liu, Junjian
Ding, Yinlu
Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title_full Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title_fullStr Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title_full_unstemmed Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title_short Identification of the ferroptosis-related ceRNA network related to prognosis and tumor immunity for gastric cancer
title_sort identification of the ferroptosis-related cerna network related to prognosis and tumor immunity for gastric cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365562/
https://www.ncbi.nlm.nih.gov/pubmed/35835721
http://dx.doi.org/10.18632/aging.204176
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