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4-bit adhesion logic enables universal multicellular interface patterning

Multicellular systems, from bacterial biofilms to human organs, form interfaces (or boundaries) between different cell collectives to spatially organize versatile functions(1,2). The evolution of sufficiently descriptive genetic toolkits probably triggered the explosion of complex multicellular life...

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Autores principales: Kim, Honesty, Skinner, Dominic J., Glass, David S., Hamby, Alexander E., Stuart, Bradey A. R., Dunkel, Jörn, Riedel-Kruse, Ingmar H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365691/
https://www.ncbi.nlm.nih.gov/pubmed/35948712
http://dx.doi.org/10.1038/s41586-022-04944-2
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author Kim, Honesty
Skinner, Dominic J.
Glass, David S.
Hamby, Alexander E.
Stuart, Bradey A. R.
Dunkel, Jörn
Riedel-Kruse, Ingmar H.
author_facet Kim, Honesty
Skinner, Dominic J.
Glass, David S.
Hamby, Alexander E.
Stuart, Bradey A. R.
Dunkel, Jörn
Riedel-Kruse, Ingmar H.
author_sort Kim, Honesty
collection PubMed
description Multicellular systems, from bacterial biofilms to human organs, form interfaces (or boundaries) between different cell collectives to spatially organize versatile functions(1,2). The evolution of sufficiently descriptive genetic toolkits probably triggered the explosion of complex multicellular life and patterning(3,4). Synthetic biology aims to engineer multicellular systems for practical applications and to serve as a build-to-understand methodology for natural systems(5–8). However, our ability to engineer multicellular interface patterns(2,9) is still very limited, as synthetic cell–cell adhesion toolkits and suitable patterning algorithms are underdeveloped(5,7,10–13). Here we introduce a synthetic cell–cell adhesin logic with swarming bacteria and establish the precise engineering, predictive modelling and algorithmic programming of multicellular interface patterns. We demonstrate interface generation through a swarming adhesion mechanism, quantitative control over interface geometry and adhesion-mediated analogues of developmental organizers and morphogen fields. Using tiling and four-colour-mapping concepts, we identify algorithms for creating universal target patterns. This synthetic 4-bit adhesion logic advances practical applications such as human-readable molecular diagnostics, spatial fluid control on biological surfaces and programmable self-growing materials(5–8,14). Notably, a minimal set of just four adhesins represents 4 bits of information that suffice to program universal tessellation patterns, implying a low critical threshold for the evolution and engineering of complex multicellular systems(3,5).
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spelling pubmed-93656912022-08-12 4-bit adhesion logic enables universal multicellular interface patterning Kim, Honesty Skinner, Dominic J. Glass, David S. Hamby, Alexander E. Stuart, Bradey A. R. Dunkel, Jörn Riedel-Kruse, Ingmar H. Nature Article Multicellular systems, from bacterial biofilms to human organs, form interfaces (or boundaries) between different cell collectives to spatially organize versatile functions(1,2). The evolution of sufficiently descriptive genetic toolkits probably triggered the explosion of complex multicellular life and patterning(3,4). Synthetic biology aims to engineer multicellular systems for practical applications and to serve as a build-to-understand methodology for natural systems(5–8). However, our ability to engineer multicellular interface patterns(2,9) is still very limited, as synthetic cell–cell adhesion toolkits and suitable patterning algorithms are underdeveloped(5,7,10–13). Here we introduce a synthetic cell–cell adhesin logic with swarming bacteria and establish the precise engineering, predictive modelling and algorithmic programming of multicellular interface patterns. We demonstrate interface generation through a swarming adhesion mechanism, quantitative control over interface geometry and adhesion-mediated analogues of developmental organizers and morphogen fields. Using tiling and four-colour-mapping concepts, we identify algorithms for creating universal target patterns. This synthetic 4-bit adhesion logic advances practical applications such as human-readable molecular diagnostics, spatial fluid control on biological surfaces and programmable self-growing materials(5–8,14). Notably, a minimal set of just four adhesins represents 4 bits of information that suffice to program universal tessellation patterns, implying a low critical threshold for the evolution and engineering of complex multicellular systems(3,5). Nature Publishing Group UK 2022-08-10 2022 /pmc/articles/PMC9365691/ /pubmed/35948712 http://dx.doi.org/10.1038/s41586-022-04944-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kim, Honesty
Skinner, Dominic J.
Glass, David S.
Hamby, Alexander E.
Stuart, Bradey A. R.
Dunkel, Jörn
Riedel-Kruse, Ingmar H.
4-bit adhesion logic enables universal multicellular interface patterning
title 4-bit adhesion logic enables universal multicellular interface patterning
title_full 4-bit adhesion logic enables universal multicellular interface patterning
title_fullStr 4-bit adhesion logic enables universal multicellular interface patterning
title_full_unstemmed 4-bit adhesion logic enables universal multicellular interface patterning
title_short 4-bit adhesion logic enables universal multicellular interface patterning
title_sort 4-bit adhesion logic enables universal multicellular interface patterning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365691/
https://www.ncbi.nlm.nih.gov/pubmed/35948712
http://dx.doi.org/10.1038/s41586-022-04944-2
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