Cargando…

GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms

Artificial Intelligence aids early diagnosis and development of new treatments, which is key to slow down the progress of the diseases, which to date have no cure. The patients’ evaluation is carried out through diagnostic techniques such as clinical assessments neuroimaging techniques, which provid...

Descripción completa

Detalles Bibliográficos
Autores principales: García-Gutierrez, Fernando, Díaz-Álvarez, Josefa, Matias-Guiu, Jordi A., Pytel, Vanesa, Matías-Guiu, Jorge, Cabrera-Martín, María Nieves, Ayala, José L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365756/
https://www.ncbi.nlm.nih.gov/pubmed/35852735
http://dx.doi.org/10.1007/s11517-022-02630-z
_version_ 1784765411457236992
author García-Gutierrez, Fernando
Díaz-Álvarez, Josefa
Matias-Guiu, Jordi A.
Pytel, Vanesa
Matías-Guiu, Jorge
Cabrera-Martín, María Nieves
Ayala, José L.
author_facet García-Gutierrez, Fernando
Díaz-Álvarez, Josefa
Matias-Guiu, Jordi A.
Pytel, Vanesa
Matías-Guiu, Jorge
Cabrera-Martín, María Nieves
Ayala, José L.
author_sort García-Gutierrez, Fernando
collection PubMed
description Artificial Intelligence aids early diagnosis and development of new treatments, which is key to slow down the progress of the diseases, which to date have no cure. The patients’ evaluation is carried out through diagnostic techniques such as clinical assessments neuroimaging techniques, which provide high-dimensionality data. In this work, a computational tool is presented that deals with the data provided by the clinical diagnostic techniques. This is a Python-based framework implemented with a modular design and fully extendable. It integrates (i) data processing and management of missing values and outliers; (ii) implementation of an evolutionary feature engineering approach, developed as a Python package, called PyWinEA using Mono-objective and Multi-objetive Genetic Algorithms (NSGAII); (iii) a module for designing predictive models based on a wide range of machine learning algorithms; (iv) a multiclass decision stage based on evolutionary grammars and Bayesian networks. Developed under the eXplainable Artificial Intelligence and open science perspective, this framework provides promising advances and opens the door to the understanding of neurodegenerative diseases from a data-centric point of view. In this work, we have successfully evaluated the potential of the framework for early and automated diagnosis with neuroimages and neurocognitive assessments from patients with Alzheimer’s disease (AD) and frontotemporal dementia (FTD). GRAPHICAL ABSTRACT: [Image: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11517-022-02630-z) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-9365756
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-93657562022-08-12 GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms García-Gutierrez, Fernando Díaz-Álvarez, Josefa Matias-Guiu, Jordi A. Pytel, Vanesa Matías-Guiu, Jorge Cabrera-Martín, María Nieves Ayala, José L. Med Biol Eng Comput Original Article Artificial Intelligence aids early diagnosis and development of new treatments, which is key to slow down the progress of the diseases, which to date have no cure. The patients’ evaluation is carried out through diagnostic techniques such as clinical assessments neuroimaging techniques, which provide high-dimensionality data. In this work, a computational tool is presented that deals with the data provided by the clinical diagnostic techniques. This is a Python-based framework implemented with a modular design and fully extendable. It integrates (i) data processing and management of missing values and outliers; (ii) implementation of an evolutionary feature engineering approach, developed as a Python package, called PyWinEA using Mono-objective and Multi-objetive Genetic Algorithms (NSGAII); (iii) a module for designing predictive models based on a wide range of machine learning algorithms; (iv) a multiclass decision stage based on evolutionary grammars and Bayesian networks. Developed under the eXplainable Artificial Intelligence and open science perspective, this framework provides promising advances and opens the door to the understanding of neurodegenerative diseases from a data-centric point of view. In this work, we have successfully evaluated the potential of the framework for early and automated diagnosis with neuroimages and neurocognitive assessments from patients with Alzheimer’s disease (AD) and frontotemporal dementia (FTD). GRAPHICAL ABSTRACT: [Image: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11517-022-02630-z) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2022-07-19 2022 /pmc/articles/PMC9365756/ /pubmed/35852735 http://dx.doi.org/10.1007/s11517-022-02630-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
García-Gutierrez, Fernando
Díaz-Álvarez, Josefa
Matias-Guiu, Jordi A.
Pytel, Vanesa
Matías-Guiu, Jorge
Cabrera-Martín, María Nieves
Ayala, José L.
GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title_full GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title_fullStr GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title_full_unstemmed GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title_short GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer’s disease and frontotemporal dementia using genetic algorithms
title_sort ga-madrid: design and validation of a machine learning tool for the diagnosis of alzheimer’s disease and frontotemporal dementia using genetic algorithms
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365756/
https://www.ncbi.nlm.nih.gov/pubmed/35852735
http://dx.doi.org/10.1007/s11517-022-02630-z
work_keys_str_mv AT garciagutierrezfernando gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT diazalvarezjosefa gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT matiasguiujordia gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT pytelvanesa gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT matiasguiujorge gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT cabreramartinmarianieves gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms
AT ayalajosel gamadriddesignandvalidationofamachinelearningtoolforthediagnosisofalzheimersdiseaseandfrontotemporaldementiausinggeneticalgorithms