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Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis

Fibronectin (FN) plays an essential role in the host’s response to infection. In previous studies, a significant decrease in the FN level was observed in sepsis; however, it has not been clearly elucidated how this parameter affects the patient’s survival. To better understand the relationship betwe...

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Autores principales: Lemańska-Perek, Anna, Krzyżanowska-Gołąb, Dorota, Kobylińska, Katarzyna, Biecek, Przemysław, Skalec, Tomasz, Tyszko, Maciej, Gozdzik, Waldemar, Adamik, Barbara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368279/
https://www.ncbi.nlm.nih.gov/pubmed/35954279
http://dx.doi.org/10.3390/cells11152433
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author Lemańska-Perek, Anna
Krzyżanowska-Gołąb, Dorota
Kobylińska, Katarzyna
Biecek, Przemysław
Skalec, Tomasz
Tyszko, Maciej
Gozdzik, Waldemar
Adamik, Barbara
author_facet Lemańska-Perek, Anna
Krzyżanowska-Gołąb, Dorota
Kobylińska, Katarzyna
Biecek, Przemysław
Skalec, Tomasz
Tyszko, Maciej
Gozdzik, Waldemar
Adamik, Barbara
author_sort Lemańska-Perek, Anna
collection PubMed
description Fibronectin (FN) plays an essential role in the host’s response to infection. In previous studies, a significant decrease in the FN level was observed in sepsis; however, it has not been clearly elucidated how this parameter affects the patient’s survival. To better understand the relationship between FN and survival, we utilized innovative approaches from the field of explainable machine learning, including local explanations (Break Down, Shapley Additive Values, Ceteris Paribus), to understand the contribution of FN to predicting individual patient survival. The methodology provides new opportunities to personalize informative predictions for patients. The results showed that the most important indicators for predicting survival in sepsis were INR, FN, age, and the APACHE II score. ROC curve analysis showed that the model’s successful classification rate was 0.92, its sensitivity was 0.92, its positive predictive value was 0.76, and its accuracy was 0.79. To illustrate these possibilities, we have developed and shared a web-based risk calculator for exploring individual patient risk. The web application can be continuously updated with new data in order to further improve the model.
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spelling pubmed-93682792022-08-12 Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis Lemańska-Perek, Anna Krzyżanowska-Gołąb, Dorota Kobylińska, Katarzyna Biecek, Przemysław Skalec, Tomasz Tyszko, Maciej Gozdzik, Waldemar Adamik, Barbara Cells Article Fibronectin (FN) plays an essential role in the host’s response to infection. In previous studies, a significant decrease in the FN level was observed in sepsis; however, it has not been clearly elucidated how this parameter affects the patient’s survival. To better understand the relationship between FN and survival, we utilized innovative approaches from the field of explainable machine learning, including local explanations (Break Down, Shapley Additive Values, Ceteris Paribus), to understand the contribution of FN to predicting individual patient survival. The methodology provides new opportunities to personalize informative predictions for patients. The results showed that the most important indicators for predicting survival in sepsis were INR, FN, age, and the APACHE II score. ROC curve analysis showed that the model’s successful classification rate was 0.92, its sensitivity was 0.92, its positive predictive value was 0.76, and its accuracy was 0.79. To illustrate these possibilities, we have developed and shared a web-based risk calculator for exploring individual patient risk. The web application can be continuously updated with new data in order to further improve the model. MDPI 2022-08-05 /pmc/articles/PMC9368279/ /pubmed/35954279 http://dx.doi.org/10.3390/cells11152433 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lemańska-Perek, Anna
Krzyżanowska-Gołąb, Dorota
Kobylińska, Katarzyna
Biecek, Przemysław
Skalec, Tomasz
Tyszko, Maciej
Gozdzik, Waldemar
Adamik, Barbara
Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title_full Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title_fullStr Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title_full_unstemmed Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title_short Explainable Artificial Intelligence Helps in Understanding the Effect of Fibronectin on Survival of Sepsis
title_sort explainable artificial intelligence helps in understanding the effect of fibronectin on survival of sepsis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368279/
https://www.ncbi.nlm.nih.gov/pubmed/35954279
http://dx.doi.org/10.3390/cells11152433
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