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Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tom...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368726/ https://www.ncbi.nlm.nih.gov/pubmed/35897806 http://dx.doi.org/10.3390/ijms23158216 |
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author | Yang, Yahui Zhao, Tingting Xu, Xiangyang Jiang, Jingbin Li, Jingfu |
author_facet | Yang, Yahui Zhao, Tingting Xu, Xiangyang Jiang, Jingbin Li, Jingfu |
author_sort | Yang, Yahui |
collection | PubMed |
description | The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tomato inflorescence branching, transcriptome analysis was conducted on two kinds of tomato inflorescences (single racemes and compound inflorescences). According to the transcriptome data analysis, there were many DEGs of tomato inflorescences at early, middle, and late stages. Then, GO and KEGG enrichments of DEGs were performed. DEGs are mainly enriched in metabolic pathways, biohormone signaling, and cell cycle pathways. According to previous studies, DEGs were mainly enriched in metabolic pathways, and FALSIFLORA (FA) and ANANTHA (AN) genes were the most notable of 41 DEGs related to inflorescence branching. This study not only provides a theoretical basis for understanding inflorescence branching, but also provides a new idea for the follow-up study of inflorescence. |
format | Online Article Text |
id | pubmed-9368726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-93687262022-08-12 Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato Yang, Yahui Zhao, Tingting Xu, Xiangyang Jiang, Jingbin Li, Jingfu Int J Mol Sci Article The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tomato inflorescence branching, transcriptome analysis was conducted on two kinds of tomato inflorescences (single racemes and compound inflorescences). According to the transcriptome data analysis, there were many DEGs of tomato inflorescences at early, middle, and late stages. Then, GO and KEGG enrichments of DEGs were performed. DEGs are mainly enriched in metabolic pathways, biohormone signaling, and cell cycle pathways. According to previous studies, DEGs were mainly enriched in metabolic pathways, and FALSIFLORA (FA) and ANANTHA (AN) genes were the most notable of 41 DEGs related to inflorescence branching. This study not only provides a theoretical basis for understanding inflorescence branching, but also provides a new idea for the follow-up study of inflorescence. MDPI 2022-07-26 /pmc/articles/PMC9368726/ /pubmed/35897806 http://dx.doi.org/10.3390/ijms23158216 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Yang, Yahui Zhao, Tingting Xu, Xiangyang Jiang, Jingbin Li, Jingfu Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title | Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title_full | Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title_fullStr | Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title_full_unstemmed | Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title_short | Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato |
title_sort | transcriptome analysis to explore the cause of the formation of different inflorescences in tomato |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368726/ https://www.ncbi.nlm.nih.gov/pubmed/35897806 http://dx.doi.org/10.3390/ijms23158216 |
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