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Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato

The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tom...

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Detalles Bibliográficos
Autores principales: Yang, Yahui, Zhao, Tingting, Xu, Xiangyang, Jiang, Jingbin, Li, Jingfu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368726/
https://www.ncbi.nlm.nih.gov/pubmed/35897806
http://dx.doi.org/10.3390/ijms23158216
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author Yang, Yahui
Zhao, Tingting
Xu, Xiangyang
Jiang, Jingbin
Li, Jingfu
author_facet Yang, Yahui
Zhao, Tingting
Xu, Xiangyang
Jiang, Jingbin
Li, Jingfu
author_sort Yang, Yahui
collection PubMed
description The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tomato inflorescence branching, transcriptome analysis was conducted on two kinds of tomato inflorescences (single racemes and compound inflorescences). According to the transcriptome data analysis, there were many DEGs of tomato inflorescences at early, middle, and late stages. Then, GO and KEGG enrichments of DEGs were performed. DEGs are mainly enriched in metabolic pathways, biohormone signaling, and cell cycle pathways. According to previous studies, DEGs were mainly enriched in metabolic pathways, and FALSIFLORA (FA) and ANANTHA (AN) genes were the most notable of 41 DEGs related to inflorescence branching. This study not only provides a theoretical basis for understanding inflorescence branching, but also provides a new idea for the follow-up study of inflorescence.
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spelling pubmed-93687262022-08-12 Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato Yang, Yahui Zhao, Tingting Xu, Xiangyang Jiang, Jingbin Li, Jingfu Int J Mol Sci Article The number of inflorescence branches is an important agronomic character of tomato. The meristem differentiation and development pattern of tomato inflorescence is complex and its regulation mechanism is very different from those of other model plants. Therefore, in order to explore the cause of tomato inflorescence branching, transcriptome analysis was conducted on two kinds of tomato inflorescences (single racemes and compound inflorescences). According to the transcriptome data analysis, there were many DEGs of tomato inflorescences at early, middle, and late stages. Then, GO and KEGG enrichments of DEGs were performed. DEGs are mainly enriched in metabolic pathways, biohormone signaling, and cell cycle pathways. According to previous studies, DEGs were mainly enriched in metabolic pathways, and FALSIFLORA (FA) and ANANTHA (AN) genes were the most notable of 41 DEGs related to inflorescence branching. This study not only provides a theoretical basis for understanding inflorescence branching, but also provides a new idea for the follow-up study of inflorescence. MDPI 2022-07-26 /pmc/articles/PMC9368726/ /pubmed/35897806 http://dx.doi.org/10.3390/ijms23158216 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Yang, Yahui
Zhao, Tingting
Xu, Xiangyang
Jiang, Jingbin
Li, Jingfu
Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title_full Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title_fullStr Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title_full_unstemmed Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title_short Transcriptome Analysis to Explore the Cause of the Formation of Different Inflorescences in Tomato
title_sort transcriptome analysis to explore the cause of the formation of different inflorescences in tomato
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9368726/
https://www.ncbi.nlm.nih.gov/pubmed/35897806
http://dx.doi.org/10.3390/ijms23158216
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