Cargando…

Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region

The identification of plant species is fundamental for the effective study and management of biodiversity. In a manual identification process, different characteristics of plants are measured as identification keys which are examined sequentially and adaptively to identify plant species. However, th...

Descripción completa

Detalles Bibliográficos
Autores principales: Malik, Owais A., Ismail, Nazrul, Hussein, Burhan R., Yahya, Umar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9370651/
https://www.ncbi.nlm.nih.gov/pubmed/35956431
http://dx.doi.org/10.3390/plants11151952
_version_ 1784766868364460032
author Malik, Owais A.
Ismail, Nazrul
Hussein, Burhan R.
Yahya, Umar
author_facet Malik, Owais A.
Ismail, Nazrul
Hussein, Burhan R.
Yahya, Umar
author_sort Malik, Owais A.
collection PubMed
description The identification of plant species is fundamental for the effective study and management of biodiversity. In a manual identification process, different characteristics of plants are measured as identification keys which are examined sequentially and adaptively to identify plant species. However, the manual process is laborious and time-consuming. Recently, technological development has called for more efficient methods to meet species’ identification requirements, such as developing digital-image-processing and pattern-recognition techniques. Despite several existing studies, there are still challenges in automating the identification of plant species accurately. This study proposed designing and developing an automated real-time plant species identification system of medicinal plants found across the Borneo region. The system is composed of a computer vision system that is used for training and testing a deep learning model, a knowledge base that acts as a dynamic database for storing plant images, together with auxiliary data, and a front-end mobile application as a user interface to the identification and feedback system. For the plant species identification task, an EfficientNet-B1-based deep learning model was adapted and trained/tested on a combined public and private plant species dataset. The proposed model achieved 87% and 84% Top-1 accuracies on a test set for the private and public datasets, respectively, which is more than a 10% accuracy improvement compared to the baseline model. During real-time system testing on the actual samples, using our mobile application, the accuracy slightly dropped to 78.5% (Top-1) and 82.6% (Top-5), which may be related to training data and testing conditions variability. A unique feature of the study is the provision of crowdsourcing feedback and geo-mapping of the species in the Borneo region, with the help of the mobile application. Nevertheless, the proposed system showed a promising direction toward real-time plant species identification system.
format Online
Article
Text
id pubmed-9370651
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-93706512022-08-12 Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region Malik, Owais A. Ismail, Nazrul Hussein, Burhan R. Yahya, Umar Plants (Basel) Article The identification of plant species is fundamental for the effective study and management of biodiversity. In a manual identification process, different characteristics of plants are measured as identification keys which are examined sequentially and adaptively to identify plant species. However, the manual process is laborious and time-consuming. Recently, technological development has called for more efficient methods to meet species’ identification requirements, such as developing digital-image-processing and pattern-recognition techniques. Despite several existing studies, there are still challenges in automating the identification of plant species accurately. This study proposed designing and developing an automated real-time plant species identification system of medicinal plants found across the Borneo region. The system is composed of a computer vision system that is used for training and testing a deep learning model, a knowledge base that acts as a dynamic database for storing plant images, together with auxiliary data, and a front-end mobile application as a user interface to the identification and feedback system. For the plant species identification task, an EfficientNet-B1-based deep learning model was adapted and trained/tested on a combined public and private plant species dataset. The proposed model achieved 87% and 84% Top-1 accuracies on a test set for the private and public datasets, respectively, which is more than a 10% accuracy improvement compared to the baseline model. During real-time system testing on the actual samples, using our mobile application, the accuracy slightly dropped to 78.5% (Top-1) and 82.6% (Top-5), which may be related to training data and testing conditions variability. A unique feature of the study is the provision of crowdsourcing feedback and geo-mapping of the species in the Borneo region, with the help of the mobile application. Nevertheless, the proposed system showed a promising direction toward real-time plant species identification system. MDPI 2022-07-27 /pmc/articles/PMC9370651/ /pubmed/35956431 http://dx.doi.org/10.3390/plants11151952 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Malik, Owais A.
Ismail, Nazrul
Hussein, Burhan R.
Yahya, Umar
Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title_full Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title_fullStr Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title_full_unstemmed Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title_short Automated Real-Time Identification of Medicinal Plants Species in Natural Environment Using Deep Learning Models—A Case Study from Borneo Region
title_sort automated real-time identification of medicinal plants species in natural environment using deep learning models—a case study from borneo region
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9370651/
https://www.ncbi.nlm.nih.gov/pubmed/35956431
http://dx.doi.org/10.3390/plants11151952
work_keys_str_mv AT malikowaisa automatedrealtimeidentificationofmedicinalplantsspeciesinnaturalenvironmentusingdeeplearningmodelsacasestudyfromborneoregion
AT ismailnazrul automatedrealtimeidentificationofmedicinalplantsspeciesinnaturalenvironmentusingdeeplearningmodelsacasestudyfromborneoregion
AT husseinburhanr automatedrealtimeidentificationofmedicinalplantsspeciesinnaturalenvironmentusingdeeplearningmodelsacasestudyfromborneoregion
AT yahyaumar automatedrealtimeidentificationofmedicinalplantsspeciesinnaturalenvironmentusingdeeplearningmodelsacasestudyfromborneoregion