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Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)

A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotempora...

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Autores principales: Chen, Yi, Wang, Jingyu, Hoar, Benjamin B., Lu, Shengtao, Liu, Chong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9371721/
https://www.ncbi.nlm.nih.gov/pubmed/35914135
http://dx.doi.org/10.1073/pnas.2206321119
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author Chen, Yi
Wang, Jingyu
Hoar, Benjamin B.
Lu, Shengtao
Liu, Chong
author_facet Chen, Yi
Wang, Jingyu
Hoar, Benjamin B.
Lu, Shengtao
Liu, Chong
author_sort Chen, Yi
collection PubMed
description A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotemporal precision. However, there is a paucity of high-throughput strategies of microenvironment design, and it remains challenging to achieve O(2) and H(2)O(2) heterogeneities with microbiologically desirable spatiotemporal resolutions. Here, we report the inverse design, based on machine learning (ML), of electrochemically generated microscopic O(2) and H(2)O(2) profiles relevant for microbiology. Microwire arrays with suitably designed electrochemical catalysts enable the independent control of O(2) and H(2)O(2) profiles with spatial resolution of ∼10(1) μm and temporal resolution of ∼10° s. Neural networks aided by data augmentation inversely design the experimental conditions needed for targeted O(2) and H(2)O(2) microenvironments while being two orders of magnitude faster than experimental explorations. Interfacing ML-based inverse design with electrochemically controlled concentration heterogeneity creates a viable fast-response platform toward better understanding the extracellular space with desirable spatiotemporal control.
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spelling pubmed-93717212022-08-12 Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) Chen, Yi Wang, Jingyu Hoar, Benjamin B. Lu, Shengtao Liu, Chong Proc Natl Acad Sci U S A Physical Sciences A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotemporal precision. However, there is a paucity of high-throughput strategies of microenvironment design, and it remains challenging to achieve O(2) and H(2)O(2) heterogeneities with microbiologically desirable spatiotemporal resolutions. Here, we report the inverse design, based on machine learning (ML), of electrochemically generated microscopic O(2) and H(2)O(2) profiles relevant for microbiology. Microwire arrays with suitably designed electrochemical catalysts enable the independent control of O(2) and H(2)O(2) profiles with spatial resolution of ∼10(1) μm and temporal resolution of ∼10° s. Neural networks aided by data augmentation inversely design the experimental conditions needed for targeted O(2) and H(2)O(2) microenvironments while being two orders of magnitude faster than experimental explorations. Interfacing ML-based inverse design with electrochemically controlled concentration heterogeneity creates a viable fast-response platform toward better understanding the extracellular space with desirable spatiotemporal control. National Academy of Sciences 2022-08-01 2022-08-09 /pmc/articles/PMC9371721/ /pubmed/35914135 http://dx.doi.org/10.1073/pnas.2206321119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Physical Sciences
Chen, Yi
Wang, Jingyu
Hoar, Benjamin B.
Lu, Shengtao
Liu, Chong
Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title_full Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title_fullStr Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title_full_unstemmed Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title_short Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
title_sort machine learning–based inverse design for electrochemically controlled microscopic gradients of o(2) and h(2)o(2)
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9371721/
https://www.ncbi.nlm.nih.gov/pubmed/35914135
http://dx.doi.org/10.1073/pnas.2206321119
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