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Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2)
A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotempora...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9371721/ https://www.ncbi.nlm.nih.gov/pubmed/35914135 http://dx.doi.org/10.1073/pnas.2206321119 |
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author | Chen, Yi Wang, Jingyu Hoar, Benjamin B. Lu, Shengtao Liu, Chong |
author_facet | Chen, Yi Wang, Jingyu Hoar, Benjamin B. Lu, Shengtao Liu, Chong |
author_sort | Chen, Yi |
collection | PubMed |
description | A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotemporal precision. However, there is a paucity of high-throughput strategies of microenvironment design, and it remains challenging to achieve O(2) and H(2)O(2) heterogeneities with microbiologically desirable spatiotemporal resolutions. Here, we report the inverse design, based on machine learning (ML), of electrochemically generated microscopic O(2) and H(2)O(2) profiles relevant for microbiology. Microwire arrays with suitably designed electrochemical catalysts enable the independent control of O(2) and H(2)O(2) profiles with spatial resolution of ∼10(1) μm and temporal resolution of ∼10° s. Neural networks aided by data augmentation inversely design the experimental conditions needed for targeted O(2) and H(2)O(2) microenvironments while being two orders of magnitude faster than experimental explorations. Interfacing ML-based inverse design with electrochemically controlled concentration heterogeneity creates a viable fast-response platform toward better understanding the extracellular space with desirable spatiotemporal control. |
format | Online Article Text |
id | pubmed-9371721 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-93717212022-08-12 Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) Chen, Yi Wang, Jingyu Hoar, Benjamin B. Lu, Shengtao Liu, Chong Proc Natl Acad Sci U S A Physical Sciences A fundamental understanding of extracellular microenvironments of O(2) and reactive oxygen species (ROS) such as H(2)O(2), ubiquitous in microbiology, demands high-throughput methods of mimicking, controlling, and perturbing gradients of O(2) and H(2)O(2) at microscopic scale with high spatiotemporal precision. However, there is a paucity of high-throughput strategies of microenvironment design, and it remains challenging to achieve O(2) and H(2)O(2) heterogeneities with microbiologically desirable spatiotemporal resolutions. Here, we report the inverse design, based on machine learning (ML), of electrochemically generated microscopic O(2) and H(2)O(2) profiles relevant for microbiology. Microwire arrays with suitably designed electrochemical catalysts enable the independent control of O(2) and H(2)O(2) profiles with spatial resolution of ∼10(1) μm and temporal resolution of ∼10° s. Neural networks aided by data augmentation inversely design the experimental conditions needed for targeted O(2) and H(2)O(2) microenvironments while being two orders of magnitude faster than experimental explorations. Interfacing ML-based inverse design with electrochemically controlled concentration heterogeneity creates a viable fast-response platform toward better understanding the extracellular space with desirable spatiotemporal control. National Academy of Sciences 2022-08-01 2022-08-09 /pmc/articles/PMC9371721/ /pubmed/35914135 http://dx.doi.org/10.1073/pnas.2206321119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Physical Sciences Chen, Yi Wang, Jingyu Hoar, Benjamin B. Lu, Shengtao Liu, Chong Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title | Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title_full | Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title_fullStr | Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title_full_unstemmed | Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title_short | Machine learning–based inverse design for electrochemically controlled microscopic gradients of O(2) and H(2)O(2) |
title_sort | machine learning–based inverse design for electrochemically controlled microscopic gradients of o(2) and h(2)o(2) |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9371721/ https://www.ncbi.nlm.nih.gov/pubmed/35914135 http://dx.doi.org/10.1073/pnas.2206321119 |
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