Cargando…

Prediction of Back-splicing sites for CircRNA formation based on convolutional neural networks

BACKGROUND: Circular RNAs (CircRNAs) play critical roles in gene expression regulation and disease development. Understanding the regulation mechanism of CircRNAs formation can help reveal the role of CircRNAs in various biological processes mentioned above. Back-splicing is important for CircRNAs f...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shen, Zhen, Shao, Yan Ling, Liu, Wei, Zhang, Qinhu, Yuan, Lin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9373444/ https://www.ncbi.nlm.nih.gov/pubmed/35962324 http://dx.doi.org/10.1186/s12864-022-08820-1

Ejemplares similares

Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network
por: Shen, Zhen, et al.
Publicado: (2023)

iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction
por: Yuan, Lin, et al.
Publicado: (2023)

Knockout of circRNAs by base editing back-splice sites of circularized exons
por: Gao, Xiang, et al.
Publicado: (2022)

GCNCMI: A Graph Convolutional Neural Network Approach for Predicting circRNA-miRNA Interactions
por: He, Jie, et al.
Publicado: (2022)

Prioritizing CircRNA–Disease Associations With Convolutional Neural Network Based on Multiple Similarity Feature Fusion
por: Fan, Chunyan, et al.
Publicado: (2020)

CircRNA Role and circRNA-Dependent Network (ceRNET) in Asthenozoospermia
por: Manfrevola, Francesco, et al.
Publicado: (2020)

CRBPDL: Identification of circRNA-RBP interaction sites using an ensemble neural network approach
por: Niu, Mengting, et al.
Publicado: (2022)

Genome-wide identification of cancer-specific alternative splicing in circRNA
por: Feng, Jing, et al.
Publicado: (2019)

CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization
por: Cao, Chao, et al.
Publicado: (2023)

Analysis of circRNAs and circRNA-associated competing endogenous RNA networks in β-thalassemia
por: Yang, Fang, et al.
Publicado: (2022)

CircSLNN: Identifying RBP-Binding Sites on circRNAs via Sequence Labeling Neural Networks
por: Ju, Yuqi, et al.
Publicado: (2019)

Reconstruction of circRNA-miRNA-mRNA associated ceRNA networks reveal functional circRNAs in intracerebral hemorrhage
por: Liu, Zhen, et al.
Publicado: (2021)

Locating transcription factor binding sites by fully convolutional neural network
por: Zhang, Qinhu, et al.
Publicado: (2021)

Matrix factorization with neural network for predicting circRNA-RBP interactions
por: Wang, Zhengfeng, et al.
Publicado: (2020)

CRPGCN: predicting circRNA-disease associations using graph convolutional network based on heterogeneous network
por: Ma, Zhihao, et al.
Publicado: (2021)

CircRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of nonalcoholic steatohepatitis
por: Jin, Xi, et al.
Publicado: (2016)

CircRNA-derived pseudogenes
por: Dong, Rui, et al.
Publicado: (2016)

CRIP: predicting circRNA–RBP-binding sites using a codon-based encoding and hybrid deep neural networks
por: Zhang, Kaiming, et al.
Publicado: (2019)

CircRNA Identification and CircRNA–miRNA–mRNA Network in Cynoglossus semilaevis Sexual Size Dimorphism
por: Gong, Zhihong, et al.
Publicado: (2022)

CircRNA expression profiles of breast cancer and construction of a circRNA-miRNA-mRNA network
por: Xu, Liping, et al.
Publicado: (2022)

NOVA2 regulates neural circRNA biogenesis
por: Knupp, David, et al.
Publicado: (2021)

Emerging roles of circRNA in formation and progression of cancer
por: Yin, Yuting, et al.
Publicado: (2019)

circRNA-TBC1D4, circRNA-NAALAD2 and circRNA-TGFBR3: Selected Key circRNAs in Neuroblastoma and Their Associations with Clinical Features
por: Lin, Weihong, et al.
Publicado: (2021)

Identifying daily changes in circRNAs and circRNA-associated-ceRNA networks in the rat pineal gland
por: Zheng, Yi, et al.
Publicado: (2021)

SpliceFinder: ab initio prediction of splice sites using convolutional neural network
por: Wang, Ruohan, et al.
Publicado: (2019)

Comprehensive analysis of circRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of atherosclerosis in rabbits
por: Zhang, Feng, et al.
Publicado: (2018)

Bioinformatics Analysis of circRNA Expression and Construction of “circRNA-miRNA-mRNA” Competing Endogenous RNAs Networks in Bipolar Disorder Patients
por: Fu, Yonghui, et al.
Publicado: (2021)

Trans-spliced mRNA products produced from circRNA expression vectors
por: Chu, Jennifer, et al.
Publicado: (2021)

Abundant Neural circRNA Cdr1as Is Not Indispensable for Retina Maintenance
por: Chen, Xue-Jiao, et al.
Publicado: (2020)

Prediction of circRNA-Disease Associations Based on the Combination of Multi-Head Graph Attention Network and Graph Convolutional Network
por: Cao, Ruifen, et al.
Publicado: (2022)

Construction of circRNA-Based ceRNA Network to Reveal the Role of circRNAs in the Progression and Prognosis of Hepatocellular Carcinoma
por: Deng, Rong, et al.
Publicado: (2021)

Comprehensive analysis of circRNA expression profiles and circRNA‐associated competing endogenous RNA networks in the development of mouse thymus
por: Li, Wenting, et al.
Publicado: (2020)

Comprehensive analysis of circRNA expression profiles and circRNA-associated competing endogenous RNA networks in IgA nephropathy
por: Liu, Haiyang, et al.
Publicado: (2020)

Construction of circRNA-Mediated Immune-Related ceRNA Network and Identification of Circulating circRNAs as Diagnostic Biomarkers in Acute Ischemic Stroke
por: Wang, Xing-Zhi, et al.
Publicado: (2022)

GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm
por: Wang, Lei, et al.
Publicado: (2020)

Comprehensive CircRNA Profiling and Selection of Key CircRNAs Reveal the Potential Regulatory Roles of CircRNAs throughout Ovarian Development and Maturation in Cynoglossus semilaevis
por: Li, Jing, et al.
Publicado: (2021)

CircPrimer: a software for annotating circRNAs and determining the specificity of circRNA primers
por: Zhong, Shanliang, et al.
Publicado: (2018)

Interactions of circRNAs with methylation: An important aspect of circRNA biogenesis and function
por: Zhang, Chunlei, et al.
Publicado: (2022)

CircRNA expression profiles and circRNA-miRNA-mRNA crosstalk in allergic rhinitis()
por: Qiu, Chang-Yu, et al.
Publicado: (2021)

CircRNA May Not Be “Circular”
por: Sun, Handong, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_eflm54j4auld2tqvecgg3mrobt