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Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution
Torque teno virus (TTV) is highly prevalent, but little is known about its circulation in humans. Here, we investigated the geographical distribution and phylogeny of TTV in Romania. A fragment of TTV untranslated region B was sequenced in samples from volunteers across the country. Additional seque...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Vienna
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9374574/ https://www.ncbi.nlm.nih.gov/pubmed/35962263 http://dx.doi.org/10.1007/s00705-022-05559-8 |
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author | Spandole-Dinu, Sonia Cimponeriu, Dănuţ Stoica, Ileana Apircioaie, Oana Gogianu, Larisa Berca, Lavinia Mariana Nica, Silvia Toma, Mihai Nica, Remus |
author_facet | Spandole-Dinu, Sonia Cimponeriu, Dănuţ Stoica, Ileana Apircioaie, Oana Gogianu, Larisa Berca, Lavinia Mariana Nica, Silvia Toma, Mihai Nica, Remus |
author_sort | Spandole-Dinu, Sonia |
collection | PubMed |
description | Torque teno virus (TTV) is highly prevalent, but little is known about its circulation in humans. Here, we investigated the geographical distribution and phylogeny of TTV in Romania. A fragment of TTV untranslated region B was sequenced in samples from volunteers across the country. Additional sequences from dialyzed patients were also included in the study. Phylogenetic analysis showed that more than 80% of Romanian sequences clustered with isolates assigned to the species Torque teno virus 1 and Torque teno virus 3 (former genogroup 1), and this analysis discriminated between isolates from the North-East and West regions. Further studies assessing the pathogenic potential of TTV isolates should employ analysis based on genomic regions with phylogenetic resolution below the species level. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-022-05559-8. |
format | Online Article Text |
id | pubmed-9374574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Springer Vienna |
record_format | MEDLINE/PubMed |
spelling | pubmed-93745742022-08-15 Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution Spandole-Dinu, Sonia Cimponeriu, Dănuţ Stoica, Ileana Apircioaie, Oana Gogianu, Larisa Berca, Lavinia Mariana Nica, Silvia Toma, Mihai Nica, Remus Arch Virol Brief Report Torque teno virus (TTV) is highly prevalent, but little is known about its circulation in humans. Here, we investigated the geographical distribution and phylogeny of TTV in Romania. A fragment of TTV untranslated region B was sequenced in samples from volunteers across the country. Additional sequences from dialyzed patients were also included in the study. Phylogenetic analysis showed that more than 80% of Romanian sequences clustered with isolates assigned to the species Torque teno virus 1 and Torque teno virus 3 (former genogroup 1), and this analysis discriminated between isolates from the North-East and West regions. Further studies assessing the pathogenic potential of TTV isolates should employ analysis based on genomic regions with phylogenetic resolution below the species level. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-022-05559-8. Springer Vienna 2022-08-13 2022 /pmc/articles/PMC9374574/ /pubmed/35962263 http://dx.doi.org/10.1007/s00705-022-05559-8 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature 2022 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Brief Report Spandole-Dinu, Sonia Cimponeriu, Dănuţ Stoica, Ileana Apircioaie, Oana Gogianu, Larisa Berca, Lavinia Mariana Nica, Silvia Toma, Mihai Nica, Remus Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title | Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title_full | Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title_fullStr | Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title_full_unstemmed | Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title_short | Phylogenetic analysis of torque teno virus in Romania: possible evidence of distinct geographical distribution |
title_sort | phylogenetic analysis of torque teno virus in romania: possible evidence of distinct geographical distribution |
topic | Brief Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9374574/ https://www.ncbi.nlm.nih.gov/pubmed/35962263 http://dx.doi.org/10.1007/s00705-022-05559-8 |
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