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Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility
The incidence of chronic obstructive pulmonary disease (COPD) is related to the interaction between environmental exposure and genetic factors. Far more than 15% of smokers eventually develop COPD. In addition to smoking, genetic susceptibility may be another factor in the development of COPD. IL‐22...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376143/ https://www.ncbi.nlm.nih.gov/pubmed/35808996 http://dx.doi.org/10.1111/crj.13517 |
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author | Wang, Yan Zhou, Qipeng Chen, Lingzhu Dong, Lian Xiong, Mingmei Xie, Xiaohui Zhao, Li Xu, Jingyi Zheng, Zeguang Wang, Jian Lu, Wenju |
author_facet | Wang, Yan Zhou, Qipeng Chen, Lingzhu Dong, Lian Xiong, Mingmei Xie, Xiaohui Zhao, Li Xu, Jingyi Zheng, Zeguang Wang, Jian Lu, Wenju |
author_sort | Wang, Yan |
collection | PubMed |
description | The incidence of chronic obstructive pulmonary disease (COPD) is related to the interaction between environmental exposure and genetic factors. Far more than 15% of smokers eventually develop COPD. In addition to smoking, genetic susceptibility may be another factor in the development of COPD. IL‐22 and its receptors are increased in human and experimental COPD and contribute to pathogenesis. Here, we conducted a case–control study to evaluate the association between IL‐22 tag‐single nucleotide polymorphisms (SNPs) and COPD risk. Four tag‐SNPs (rs2227478, rs2227481, rs2227484 and rs2227485) were identified according to linkage disequilibrium (LD) analysis in 30 healthy controls. A total of 513 COPD cases and 504 controls were recruited to perform an association study between these four tag‐SNPs and COPD risk. We found that the “C” allele of rs2227478T>C and the “T” allele of rs2227481C>T were obviously related to decreased COPD susceptibility. Genetic model analysis showed that rs2227478T>C and rs2227481C>T were significantly associated with a decreased risk of COPD under dominant models after adjusting for the above factors. In the recessive model, rs2227485T>C was obviously associated with decreased COPD risk. Our data showed that only rs2227485T>C was associated with a decreased COPD risk after Bonferroni correction. The eQTL analysis showed that rs2227485T>C was significantly associated with IL‐22 expression. The pGL4‐rs2227485‐C gene reporter had a higher promoter activity than pGL4‐rs2227485‐T. In our study, rs2227485T>C, located in the promoter region of IL‐22, was associated with a decreased risk of COPD and increased IL‐22 promoter activity, suggesting that this variant might modulate COPD susceptibility. |
format | Online Article Text |
id | pubmed-9376143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93761432022-08-18 Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility Wang, Yan Zhou, Qipeng Chen, Lingzhu Dong, Lian Xiong, Mingmei Xie, Xiaohui Zhao, Li Xu, Jingyi Zheng, Zeguang Wang, Jian Lu, Wenju Clin Respir J Original Articles The incidence of chronic obstructive pulmonary disease (COPD) is related to the interaction between environmental exposure and genetic factors. Far more than 15% of smokers eventually develop COPD. In addition to smoking, genetic susceptibility may be another factor in the development of COPD. IL‐22 and its receptors are increased in human and experimental COPD and contribute to pathogenesis. Here, we conducted a case–control study to evaluate the association between IL‐22 tag‐single nucleotide polymorphisms (SNPs) and COPD risk. Four tag‐SNPs (rs2227478, rs2227481, rs2227484 and rs2227485) were identified according to linkage disequilibrium (LD) analysis in 30 healthy controls. A total of 513 COPD cases and 504 controls were recruited to perform an association study between these four tag‐SNPs and COPD risk. We found that the “C” allele of rs2227478T>C and the “T” allele of rs2227481C>T were obviously related to decreased COPD susceptibility. Genetic model analysis showed that rs2227478T>C and rs2227481C>T were significantly associated with a decreased risk of COPD under dominant models after adjusting for the above factors. In the recessive model, rs2227485T>C was obviously associated with decreased COPD risk. Our data showed that only rs2227485T>C was associated with a decreased COPD risk after Bonferroni correction. The eQTL analysis showed that rs2227485T>C was significantly associated with IL‐22 expression. The pGL4‐rs2227485‐C gene reporter had a higher promoter activity than pGL4‐rs2227485‐T. In our study, rs2227485T>C, located in the promoter region of IL‐22, was associated with a decreased risk of COPD and increased IL‐22 promoter activity, suggesting that this variant might modulate COPD susceptibility. John Wiley and Sons Inc. 2022-07-09 /pmc/articles/PMC9376143/ /pubmed/35808996 http://dx.doi.org/10.1111/crj.13517 Text en © 2022 The Authors. The Clinical Respiratory Journal published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Wang, Yan Zhou, Qipeng Chen, Lingzhu Dong, Lian Xiong, Mingmei Xie, Xiaohui Zhao, Li Xu, Jingyi Zheng, Zeguang Wang, Jian Lu, Wenju Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title | Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title_full | Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title_fullStr | Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title_full_unstemmed | Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title_short | Identification of genetic variants of the IL‐22 gene in association with an altered risk of COPD susceptibility |
title_sort | identification of genetic variants of the il‐22 gene in association with an altered risk of copd susceptibility |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376143/ https://www.ncbi.nlm.nih.gov/pubmed/35808996 http://dx.doi.org/10.1111/crj.13517 |
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