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A fuzzy logic-based computational method for the repurposing of drugs against COVID-19

[Image: see text] Introduction: COVID-19 has spread out all around the world and seriously interrupted human activities. Being a newfound disease, not only many aspects of the disease are unknown, but also there is not an effective medication to cure the disease. Besides, designing a drug is a time-...

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Autores principales: Masoudi-Sobhanzadeh, Yosef, Esmaeili, Hosein, Masoudi-Nejad, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Tabriz University of Medical Sciences (TUOMS Publishing Group) 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376160/
https://www.ncbi.nlm.nih.gov/pubmed/35975205
http://dx.doi.org/10.34172/bi.2021.40
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author Masoudi-Sobhanzadeh, Yosef
Esmaeili, Hosein
Masoudi-Nejad, Ali
author_facet Masoudi-Sobhanzadeh, Yosef
Esmaeili, Hosein
Masoudi-Nejad, Ali
author_sort Masoudi-Sobhanzadeh, Yosef
collection PubMed
description [Image: see text] Introduction: COVID-19 has spread out all around the world and seriously interrupted human activities. Being a newfound disease, not only many aspects of the disease are unknown, but also there is not an effective medication to cure the disease. Besides, designing a drug is a time-consuming process and needs large investment. Hence, drug repurposing techniques, employed to discover the hidden benefits of the existing drugs, maybe a useful option for treating COVID-19. Methods: The present study exploits the drug repositioning concepts and introduces some candidate drugs which may be effective in controlling COVID-19. The suggested method consists of three main steps. First, the required data such as the amino acid sequences of targets and drug-target interactions are extracted from the public databases. Second, the similarity score between the targets (protein/enzymes) and genome of SARS-COV-2 is computed using the proposed fuzzy logic-based method. Since the classical approaches yield outcomes which may not be useful for the real-world applications, the fuzzy technique can address the issue. Third, after ranking targets based on the obtained scores, the usefulness of drugs affecting them is examined for managing COVID-19. Results: The results indicate that antiviral medicines, designed for curing hepatitis C, may also cure COVID-19. According to the findings, ribavirin, simeprevir, danoprevir, and XTL-6865 may be helpful in controlling the disease. Conclusion: It can be concluded that the similarity-based drug repurposing techniques may be the most suitable option for managing emerging diseases such as COVID-19 and can be applied to a wide range of data. Also, fuzzy logic-based scoring methods can produce outcomes which are more consistent with the real-world biological applications than others.
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spelling pubmed-93761602022-08-15 A fuzzy logic-based computational method for the repurposing of drugs against COVID-19 Masoudi-Sobhanzadeh, Yosef Esmaeili, Hosein Masoudi-Nejad, Ali Bioimpacts Original Research [Image: see text] Introduction: COVID-19 has spread out all around the world and seriously interrupted human activities. Being a newfound disease, not only many aspects of the disease are unknown, but also there is not an effective medication to cure the disease. Besides, designing a drug is a time-consuming process and needs large investment. Hence, drug repurposing techniques, employed to discover the hidden benefits of the existing drugs, maybe a useful option for treating COVID-19. Methods: The present study exploits the drug repositioning concepts and introduces some candidate drugs which may be effective in controlling COVID-19. The suggested method consists of three main steps. First, the required data such as the amino acid sequences of targets and drug-target interactions are extracted from the public databases. Second, the similarity score between the targets (protein/enzymes) and genome of SARS-COV-2 is computed using the proposed fuzzy logic-based method. Since the classical approaches yield outcomes which may not be useful for the real-world applications, the fuzzy technique can address the issue. Third, after ranking targets based on the obtained scores, the usefulness of drugs affecting them is examined for managing COVID-19. Results: The results indicate that antiviral medicines, designed for curing hepatitis C, may also cure COVID-19. According to the findings, ribavirin, simeprevir, danoprevir, and XTL-6865 may be helpful in controlling the disease. Conclusion: It can be concluded that the similarity-based drug repurposing techniques may be the most suitable option for managing emerging diseases such as COVID-19 and can be applied to a wide range of data. Also, fuzzy logic-based scoring methods can produce outcomes which are more consistent with the real-world biological applications than others. Tabriz University of Medical Sciences (TUOMS Publishing Group) 2022 2021-08-10 /pmc/articles/PMC9376160/ /pubmed/35975205 http://dx.doi.org/10.34172/bi.2021.40 Text en © 2022 The Author(s). https://creativecommons.org/licenses/by-nc/4.0/ This work is published by BioImpacts as an open access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ). Non-commercial uses of the work are permitted, provided the original work is properly cited.
spellingShingle Original Research
Masoudi-Sobhanzadeh, Yosef
Esmaeili, Hosein
Masoudi-Nejad, Ali
A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title_full A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title_fullStr A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title_full_unstemmed A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title_short A fuzzy logic-based computational method for the repurposing of drugs against COVID-19
title_sort fuzzy logic-based computational method for the repurposing of drugs against covid-19
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376160/
https://www.ncbi.nlm.nih.gov/pubmed/35975205
http://dx.doi.org/10.34172/bi.2021.40
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