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Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
[Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376945/ https://www.ncbi.nlm.nih.gov/pubmed/35917500 http://dx.doi.org/10.1021/acs.jpcb.2c03554 |
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author | Tang, Bridget Chong, Katie Massefski, Walter Evans, Robert |
author_facet | Tang, Bridget Chong, Katie Massefski, Walter Evans, Robert |
author_sort | Tang, Bridget |
collection | PubMed |
description | [Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients is typically purely qualitative, for example, to deduce which species are bigger or smaller. In studies of proteins in solution, important questions concern the molecular weight of the proteins, the presence or absence of aggregation, and the degree of folding. The Stokes–Einstein Gierer–Wirtz estimation (SEGWE) method has been previously developed to simplify the complex relationship between diffusion coefficient and molecular mass, allowing the prediction of a species’ diffusion coefficient in a pure solvent based on its molecular weight. Here, we show that SEGWE can be extended to successfully predict both peptide and protein diffusion coefficients in mixed protiated–deuteriated water samples and, hence, distinguish effectively between globular and disordered proteins. |
format | Online Article Text |
id | pubmed-9376945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-93769452022-08-16 Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents Tang, Bridget Chong, Katie Massefski, Walter Evans, Robert J Phys Chem B [Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients is typically purely qualitative, for example, to deduce which species are bigger or smaller. In studies of proteins in solution, important questions concern the molecular weight of the proteins, the presence or absence of aggregation, and the degree of folding. The Stokes–Einstein Gierer–Wirtz estimation (SEGWE) method has been previously developed to simplify the complex relationship between diffusion coefficient and molecular mass, allowing the prediction of a species’ diffusion coefficient in a pure solvent based on its molecular weight. Here, we show that SEGWE can be extended to successfully predict both peptide and protein diffusion coefficients in mixed protiated–deuteriated water samples and, hence, distinguish effectively between globular and disordered proteins. American Chemical Society 2022-08-02 2022-08-11 /pmc/articles/PMC9376945/ /pubmed/35917500 http://dx.doi.org/10.1021/acs.jpcb.2c03554 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Tang, Bridget Chong, Katie Massefski, Walter Evans, Robert Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents |
title | Quantitative Interpretation
of Protein Diffusion Coefficients
in Mixed Protiated–Deuteriated Aqueous Solvents |
title_full | Quantitative Interpretation
of Protein Diffusion Coefficients
in Mixed Protiated–Deuteriated Aqueous Solvents |
title_fullStr | Quantitative Interpretation
of Protein Diffusion Coefficients
in Mixed Protiated–Deuteriated Aqueous Solvents |
title_full_unstemmed | Quantitative Interpretation
of Protein Diffusion Coefficients
in Mixed Protiated–Deuteriated Aqueous Solvents |
title_short | Quantitative Interpretation
of Protein Diffusion Coefficients
in Mixed Protiated–Deuteriated Aqueous Solvents |
title_sort | quantitative interpretation
of protein diffusion coefficients
in mixed protiated–deuteriated aqueous solvents |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376945/ https://www.ncbi.nlm.nih.gov/pubmed/35917500 http://dx.doi.org/10.1021/acs.jpcb.2c03554 |
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