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Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents

[Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients...

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Autores principales: Tang, Bridget, Chong, Katie, Massefski, Walter, Evans, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376945/
https://www.ncbi.nlm.nih.gov/pubmed/35917500
http://dx.doi.org/10.1021/acs.jpcb.2c03554
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author Tang, Bridget
Chong, Katie
Massefski, Walter
Evans, Robert
author_facet Tang, Bridget
Chong, Katie
Massefski, Walter
Evans, Robert
author_sort Tang, Bridget
collection PubMed
description [Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients is typically purely qualitative, for example, to deduce which species are bigger or smaller. In studies of proteins in solution, important questions concern the molecular weight of the proteins, the presence or absence of aggregation, and the degree of folding. The Stokes–Einstein Gierer–Wirtz estimation (SEGWE) method has been previously developed to simplify the complex relationship between diffusion coefficient and molecular mass, allowing the prediction of a species’ diffusion coefficient in a pure solvent based on its molecular weight. Here, we show that SEGWE can be extended to successfully predict both peptide and protein diffusion coefficients in mixed protiated–deuteriated water samples and, hence, distinguish effectively between globular and disordered proteins.
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spelling pubmed-93769452022-08-16 Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents Tang, Bridget Chong, Katie Massefski, Walter Evans, Robert J Phys Chem B [Image: see text] Diffusion-ordered nuclear magnetic resonance (NMR) spectroscopy is widely used for the analysis of mixtures, dispersing the signals of different species in a two-dimensional spectrum according to their diffusion coefficients. However, interpretation of these diffusion coefficients is typically purely qualitative, for example, to deduce which species are bigger or smaller. In studies of proteins in solution, important questions concern the molecular weight of the proteins, the presence or absence of aggregation, and the degree of folding. The Stokes–Einstein Gierer–Wirtz estimation (SEGWE) method has been previously developed to simplify the complex relationship between diffusion coefficient and molecular mass, allowing the prediction of a species’ diffusion coefficient in a pure solvent based on its molecular weight. Here, we show that SEGWE can be extended to successfully predict both peptide and protein diffusion coefficients in mixed protiated–deuteriated water samples and, hence, distinguish effectively between globular and disordered proteins. American Chemical Society 2022-08-02 2022-08-11 /pmc/articles/PMC9376945/ /pubmed/35917500 http://dx.doi.org/10.1021/acs.jpcb.2c03554 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Tang, Bridget
Chong, Katie
Massefski, Walter
Evans, Robert
Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title_full Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title_fullStr Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title_full_unstemmed Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title_short Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated–Deuteriated Aqueous Solvents
title_sort quantitative interpretation of protein diffusion coefficients in mixed protiated–deuteriated aqueous solvents
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9376945/
https://www.ncbi.nlm.nih.gov/pubmed/35917500
http://dx.doi.org/10.1021/acs.jpcb.2c03554
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