The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China

Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae) is one of the genuine medicinal materials in Qinghai-Tibet Plateau, China. Here we report the first chloroplast (cp) genome of G. paludosa using Illumina NovaSeq 6000 platform. The length of its complete cp genome is 151,568 bp, containing four sub-...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Hongyu, Li, Jinping, Zeng, Yang, Zhang, Ruifeng, Zhang, Junyan, Liu, Likuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9377260/
https://www.ncbi.nlm.nih.gov/pubmed/35979391
http://dx.doi.org/10.1080/23802359.2021.1915198
_version_ 1784768303790555136
author Wang, Hongyu
Li, Jinping
Zeng, Yang
Zhang, Ruifeng
Zhang, Junyan
Liu, Likuan
author_facet Wang, Hongyu
Li, Jinping
Zeng, Yang
Zhang, Ruifeng
Zhang, Junyan
Liu, Likuan
author_sort Wang, Hongyu
collection PubMed
description Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae) is one of the genuine medicinal materials in Qinghai-Tibet Plateau, China. Here we report the first chloroplast (cp) genome of G. paludosa using Illumina NovaSeq 6000 platform. The length of its complete cp genome is 151,568 bp, containing four sub-regions; a large single copy region (LSC) of 82,834 bp and a small single copy region (SSC) of 17,928 bp are separated by a pair of inverted repeat regions (IRs) of 25,403bp. The complete cp genome of G. paludosa contains 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the cp genome is 37.8%. The phylogenetic analysis, based on 23 cp genomes, suggested that G. paludosa is closely related to G. grandis (H. Smith) Ma and Swertia species.
format Online
Article
Text
id pubmed-9377260
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-93772602022-08-16 The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China Wang, Hongyu Li, Jinping Zeng, Yang Zhang, Ruifeng Zhang, Junyan Liu, Likuan Mitochondrial DNA B Resour Mitogenome Announcement Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae) is one of the genuine medicinal materials in Qinghai-Tibet Plateau, China. Here we report the first chloroplast (cp) genome of G. paludosa using Illumina NovaSeq 6000 platform. The length of its complete cp genome is 151,568 bp, containing four sub-regions; a large single copy region (LSC) of 82,834 bp and a small single copy region (SSC) of 17,928 bp are separated by a pair of inverted repeat regions (IRs) of 25,403bp. The complete cp genome of G. paludosa contains 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the cp genome is 37.8%. The phylogenetic analysis, based on 23 cp genomes, suggested that G. paludosa is closely related to G. grandis (H. Smith) Ma and Swertia species. Taylor & Francis 2022-08-12 /pmc/articles/PMC9377260/ /pubmed/35979391 http://dx.doi.org/10.1080/23802359.2021.1915198 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Hongyu
Li, Jinping
Zeng, Yang
Zhang, Ruifeng
Zhang, Junyan
Liu, Likuan
The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title_full The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title_fullStr The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title_full_unstemmed The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title_short The complete chloroplast genome of a medical herb, Gentianopsis paludosa (Hook. f.) Ma (Gentianaceae), from Qinghai-Tibet Plateau in China
title_sort complete chloroplast genome of a medical herb, gentianopsis paludosa (hook. f.) ma (gentianaceae), from qinghai-tibet plateau in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9377260/
https://www.ncbi.nlm.nih.gov/pubmed/35979391
http://dx.doi.org/10.1080/23802359.2021.1915198
work_keys_str_mv AT wanghongyu thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT lijinping thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zengyang thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zhangruifeng thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zhangjunyan thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT liulikuan thecompletechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT wanghongyu completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT lijinping completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zengyang completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zhangruifeng completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT zhangjunyan completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina
AT liulikuan completechloroplastgenomeofamedicalherbgentianopsispaludosahookfmagentianaceaefromqinghaitibetplateauinchina

Ejemplares similares