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Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization

Deep learning-based image reconstruction methods have achieved remarkable success in phase recovery and holographic imaging. However, the generalization of their image reconstruction performance to new types of samples never seen by the network remains a challenge. Here we introduce a deep learning...

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Autores principales: Chen, Hanlong, Huang, Luzhe, Liu, Tairan, Ozcan, Aydogan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9378708/
https://www.ncbi.nlm.nih.gov/pubmed/35970839
http://dx.doi.org/10.1038/s41377-022-00949-8
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author Chen, Hanlong
Huang, Luzhe
Liu, Tairan
Ozcan, Aydogan
author_facet Chen, Hanlong
Huang, Luzhe
Liu, Tairan
Ozcan, Aydogan
author_sort Chen, Hanlong
collection PubMed
description Deep learning-based image reconstruction methods have achieved remarkable success in phase recovery and holographic imaging. However, the generalization of their image reconstruction performance to new types of samples never seen by the network remains a challenge. Here we introduce a deep learning framework, termed Fourier Imager Network (FIN), that can perform end-to-end phase recovery and image reconstruction from raw holograms of new types of samples, exhibiting unprecedented success in external generalization. FIN architecture is based on spatial Fourier transform modules that process the spatial frequencies of its inputs using learnable filters and a global receptive field. Compared with existing convolutional deep neural networks used for hologram reconstruction, FIN exhibits superior generalization to new types of samples, while also being much faster in its image inference speed, completing the hologram reconstruction task in ~0.04 s per 1 mm(2) of the sample area. We experimentally validated the performance of FIN by training it using human lung tissue samples and blindly testing it on human prostate, salivary gland tissue and Pap smear samples, proving its superior external generalization and image reconstruction speed. Beyond holographic microscopy and quantitative phase imaging, FIN and the underlying neural network architecture might open up various new opportunities to design broadly generalizable deep learning models in computational imaging and machine vision fields.
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spelling pubmed-93787082022-08-17 Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization Chen, Hanlong Huang, Luzhe Liu, Tairan Ozcan, Aydogan Light Sci Appl Article Deep learning-based image reconstruction methods have achieved remarkable success in phase recovery and holographic imaging. However, the generalization of their image reconstruction performance to new types of samples never seen by the network remains a challenge. Here we introduce a deep learning framework, termed Fourier Imager Network (FIN), that can perform end-to-end phase recovery and image reconstruction from raw holograms of new types of samples, exhibiting unprecedented success in external generalization. FIN architecture is based on spatial Fourier transform modules that process the spatial frequencies of its inputs using learnable filters and a global receptive field. Compared with existing convolutional deep neural networks used for hologram reconstruction, FIN exhibits superior generalization to new types of samples, while also being much faster in its image inference speed, completing the hologram reconstruction task in ~0.04 s per 1 mm(2) of the sample area. We experimentally validated the performance of FIN by training it using human lung tissue samples and blindly testing it on human prostate, salivary gland tissue and Pap smear samples, proving its superior external generalization and image reconstruction speed. Beyond holographic microscopy and quantitative phase imaging, FIN and the underlying neural network architecture might open up various new opportunities to design broadly generalizable deep learning models in computational imaging and machine vision fields. Nature Publishing Group UK 2022-08-16 /pmc/articles/PMC9378708/ /pubmed/35970839 http://dx.doi.org/10.1038/s41377-022-00949-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chen, Hanlong
Huang, Luzhe
Liu, Tairan
Ozcan, Aydogan
Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title_full Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title_fullStr Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title_full_unstemmed Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title_short Fourier Imager Network (FIN): A deep neural network for hologram reconstruction with superior external generalization
title_sort fourier imager network (fin): a deep neural network for hologram reconstruction with superior external generalization
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9378708/
https://www.ncbi.nlm.nih.gov/pubmed/35970839
http://dx.doi.org/10.1038/s41377-022-00949-8
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