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Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition

The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approach has been widely used to detect the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, instead of using it alone, clinicians often prefer to diagnose the coronavirus disease 2019 (COVID-19) by util...

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Autores principales: Nurputra, Dian Kesumapramudya, Kusumaatmaja, Ahmad, Hakim, Mohamad Saifudin, Hidayat, Shidiq Nur, Julian, Trisna, Sumanto, Budi, Mahendradhata, Yodi, Saktiawati, Antonia Morita Iswari, Wasisto, Hutomo Suryo, Triyana, Kuwat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9379872/
https://www.ncbi.nlm.nih.gov/pubmed/35974062
http://dx.doi.org/10.1038/s41746-022-00661-2
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author Nurputra, Dian Kesumapramudya
Kusumaatmaja, Ahmad
Hakim, Mohamad Saifudin
Hidayat, Shidiq Nur
Julian, Trisna
Sumanto, Budi
Mahendradhata, Yodi
Saktiawati, Antonia Morita Iswari
Wasisto, Hutomo Suryo
Triyana, Kuwat
author_facet Nurputra, Dian Kesumapramudya
Kusumaatmaja, Ahmad
Hakim, Mohamad Saifudin
Hidayat, Shidiq Nur
Julian, Trisna
Sumanto, Budi
Mahendradhata, Yodi
Saktiawati, Antonia Morita Iswari
Wasisto, Hutomo Suryo
Triyana, Kuwat
author_sort Nurputra, Dian Kesumapramudya
collection PubMed
description The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approach has been widely used to detect the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, instead of using it alone, clinicians often prefer to diagnose the coronavirus disease 2019 (COVID-19) by utilizing a combination of clinical signs and symptoms, laboratory test, imaging measurement (e.g., chest computed tomography scan), and multivariable clinical prediction models, including the electronic nose. Here, we report on the development and use of a low cost, noninvasive method to rapidly sniff out COVID-19 based on a portable electronic nose (GeNose C19) integrating an array of metal oxide semiconductor gas sensors, optimized feature extraction, and machine learning models. This approach was evaluated in profiling tests involving a total of 615 breath samples composed of 333 positive and 282 negative samples. The samples were obtained from 43 positive and 40 negative COVID-19 patients, respectively, and confirmed with RT-qPCR at two hospitals located in the Special Region of Yogyakarta, Indonesia. Four different machine learning algorithms (i.e., linear discriminant analysis, support vector machine, stacked multilayer perceptron, and deep neural network) were utilized to identify the top-performing pattern recognition methods and to obtain a high system detection accuracy (88–95%), sensitivity (86–94%), and specificity (88–95%) levels from the testing datasets. Our results suggest that GeNose C19 can be considered a highly potential breathalyzer for fast COVID-19 screening.
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spelling pubmed-93798722022-08-16 Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition Nurputra, Dian Kesumapramudya Kusumaatmaja, Ahmad Hakim, Mohamad Saifudin Hidayat, Shidiq Nur Julian, Trisna Sumanto, Budi Mahendradhata, Yodi Saktiawati, Antonia Morita Iswari Wasisto, Hutomo Suryo Triyana, Kuwat NPJ Digit Med Article The reverse transcription-quantitative polymerase chain reaction (RT-qPCR) approach has been widely used to detect the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, instead of using it alone, clinicians often prefer to diagnose the coronavirus disease 2019 (COVID-19) by utilizing a combination of clinical signs and symptoms, laboratory test, imaging measurement (e.g., chest computed tomography scan), and multivariable clinical prediction models, including the electronic nose. Here, we report on the development and use of a low cost, noninvasive method to rapidly sniff out COVID-19 based on a portable electronic nose (GeNose C19) integrating an array of metal oxide semiconductor gas sensors, optimized feature extraction, and machine learning models. This approach was evaluated in profiling tests involving a total of 615 breath samples composed of 333 positive and 282 negative samples. The samples were obtained from 43 positive and 40 negative COVID-19 patients, respectively, and confirmed with RT-qPCR at two hospitals located in the Special Region of Yogyakarta, Indonesia. Four different machine learning algorithms (i.e., linear discriminant analysis, support vector machine, stacked multilayer perceptron, and deep neural network) were utilized to identify the top-performing pattern recognition methods and to obtain a high system detection accuracy (88–95%), sensitivity (86–94%), and specificity (88–95%) levels from the testing datasets. Our results suggest that GeNose C19 can be considered a highly potential breathalyzer for fast COVID-19 screening. Nature Publishing Group UK 2022-08-16 /pmc/articles/PMC9379872/ /pubmed/35974062 http://dx.doi.org/10.1038/s41746-022-00661-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nurputra, Dian Kesumapramudya
Kusumaatmaja, Ahmad
Hakim, Mohamad Saifudin
Hidayat, Shidiq Nur
Julian, Trisna
Sumanto, Budi
Mahendradhata, Yodi
Saktiawati, Antonia Morita Iswari
Wasisto, Hutomo Suryo
Triyana, Kuwat
Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title_full Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title_fullStr Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title_full_unstemmed Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title_short Fast and noninvasive electronic nose for sniffing out COVID-19 based on exhaled breath-print recognition
title_sort fast and noninvasive electronic nose for sniffing out covid-19 based on exhaled breath-print recognition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9379872/
https://www.ncbi.nlm.nih.gov/pubmed/35974062
http://dx.doi.org/10.1038/s41746-022-00661-2
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