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Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacke...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9380148/ https://www.ncbi.nlm.nih.gov/pubmed/35734998 http://dx.doi.org/10.1002/acn3.51612 |
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author | Bruels, Christine C. Littel, Hannah R. Daugherty, Audrey L. Stafki, Seth Estrella, Elicia A. McGaughy, Emily S. Truong, Don Badalamenti, Jonathan P. Pais, Lynn Ganesh, Vijay S. O'Donnell‐Luria, Anne Stalker, Heather J. Wang, Yang Collins, Christin Behlmann, Andrea Lemmers, Richard J. L. F. van der Maarel, Silvère M. Laine, Regina Ghosh, Partha S. Darras, Basil T. Zingariello, Carla D. Pacak, Christina A. Kunkel, Louis M. Kang, Peter B. |
author_facet | Bruels, Christine C. Littel, Hannah R. Daugherty, Audrey L. Stafki, Seth Estrella, Elicia A. McGaughy, Emily S. Truong, Don Badalamenti, Jonathan P. Pais, Lynn Ganesh, Vijay S. O'Donnell‐Luria, Anne Stalker, Heather J. Wang, Yang Collins, Christin Behlmann, Andrea Lemmers, Richard J. L. F. van der Maarel, Silvère M. Laine, Regina Ghosh, Partha S. Darras, Basil T. Zingariello, Carla D. Pacak, Christina A. Kunkel, Louis M. Kang, Peter B. |
author_sort | Bruels, Christine C. |
collection | PubMed |
description | Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacked complete genetic diagnoses and one had an asymptomatic DMD duplication. Nanopore genomic long‐read sequencing identified previously undetected pathogenic variants in four individuals: an SV in DMD, an SV in LAMA2, and two single nucleotide variants in DMD that alter splicing. The DMD duplication in the asymptomatic individual was in tandem. Nanopore sequencing may help streamline genetic diagnostic approaches for muscular dystrophy. |
format | Online Article Text |
id | pubmed-9380148 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93801482022-08-19 Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy Bruels, Christine C. Littel, Hannah R. Daugherty, Audrey L. Stafki, Seth Estrella, Elicia A. McGaughy, Emily S. Truong, Don Badalamenti, Jonathan P. Pais, Lynn Ganesh, Vijay S. O'Donnell‐Luria, Anne Stalker, Heather J. Wang, Yang Collins, Christin Behlmann, Andrea Lemmers, Richard J. L. F. van der Maarel, Silvère M. Laine, Regina Ghosh, Partha S. Darras, Basil T. Zingariello, Carla D. Pacak, Christina A. Kunkel, Louis M. Kang, Peter B. Ann Clin Transl Neurol Brief Communications Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacked complete genetic diagnoses and one had an asymptomatic DMD duplication. Nanopore genomic long‐read sequencing identified previously undetected pathogenic variants in four individuals: an SV in DMD, an SV in LAMA2, and two single nucleotide variants in DMD that alter splicing. The DMD duplication in the asymptomatic individual was in tandem. Nanopore sequencing may help streamline genetic diagnostic approaches for muscular dystrophy. John Wiley and Sons Inc. 2022-06-23 /pmc/articles/PMC9380148/ /pubmed/35734998 http://dx.doi.org/10.1002/acn3.51612 Text en © 2022 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Brief Communications Bruels, Christine C. Littel, Hannah R. Daugherty, Audrey L. Stafki, Seth Estrella, Elicia A. McGaughy, Emily S. Truong, Don Badalamenti, Jonathan P. Pais, Lynn Ganesh, Vijay S. O'Donnell‐Luria, Anne Stalker, Heather J. Wang, Yang Collins, Christin Behlmann, Andrea Lemmers, Richard J. L. F. van der Maarel, Silvère M. Laine, Regina Ghosh, Partha S. Darras, Basil T. Zingariello, Carla D. Pacak, Christina A. Kunkel, Louis M. Kang, Peter B. Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title | Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title_full | Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title_fullStr | Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title_full_unstemmed | Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title_short | Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
title_sort | diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy |
topic | Brief Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9380148/ https://www.ncbi.nlm.nih.gov/pubmed/35734998 http://dx.doi.org/10.1002/acn3.51612 |
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