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Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy

Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacke...

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Autores principales: Bruels, Christine C., Littel, Hannah R., Daugherty, Audrey L., Stafki, Seth, Estrella, Elicia A., McGaughy, Emily S., Truong, Don, Badalamenti, Jonathan P., Pais, Lynn, Ganesh, Vijay S., O'Donnell‐Luria, Anne, Stalker, Heather J., Wang, Yang, Collins, Christin, Behlmann, Andrea, Lemmers, Richard J. L. F., van der Maarel, Silvère M., Laine, Regina, Ghosh, Partha S., Darras, Basil T., Zingariello, Carla D., Pacak, Christina A., Kunkel, Louis M., Kang, Peter B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9380148/
https://www.ncbi.nlm.nih.gov/pubmed/35734998
http://dx.doi.org/10.1002/acn3.51612
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author Bruels, Christine C.
Littel, Hannah R.
Daugherty, Audrey L.
Stafki, Seth
Estrella, Elicia A.
McGaughy, Emily S.
Truong, Don
Badalamenti, Jonathan P.
Pais, Lynn
Ganesh, Vijay S.
O'Donnell‐Luria, Anne
Stalker, Heather J.
Wang, Yang
Collins, Christin
Behlmann, Andrea
Lemmers, Richard J. L. F.
van der Maarel, Silvère M.
Laine, Regina
Ghosh, Partha S.
Darras, Basil T.
Zingariello, Carla D.
Pacak, Christina A.
Kunkel, Louis M.
Kang, Peter B.
author_facet Bruels, Christine C.
Littel, Hannah R.
Daugherty, Audrey L.
Stafki, Seth
Estrella, Elicia A.
McGaughy, Emily S.
Truong, Don
Badalamenti, Jonathan P.
Pais, Lynn
Ganesh, Vijay S.
O'Donnell‐Luria, Anne
Stalker, Heather J.
Wang, Yang
Collins, Christin
Behlmann, Andrea
Lemmers, Richard J. L. F.
van der Maarel, Silvère M.
Laine, Regina
Ghosh, Partha S.
Darras, Basil T.
Zingariello, Carla D.
Pacak, Christina A.
Kunkel, Louis M.
Kang, Peter B.
author_sort Bruels, Christine C.
collection PubMed
description Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacked complete genetic diagnoses and one had an asymptomatic DMD duplication. Nanopore genomic long‐read sequencing identified previously undetected pathogenic variants in four individuals: an SV in DMD, an SV in LAMA2, and two single nucleotide variants in DMD that alter splicing. The DMD duplication in the asymptomatic individual was in tandem. Nanopore sequencing may help streamline genetic diagnostic approaches for muscular dystrophy.
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spelling pubmed-93801482022-08-19 Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy Bruels, Christine C. Littel, Hannah R. Daugherty, Audrey L. Stafki, Seth Estrella, Elicia A. McGaughy, Emily S. Truong, Don Badalamenti, Jonathan P. Pais, Lynn Ganesh, Vijay S. O'Donnell‐Luria, Anne Stalker, Heather J. Wang, Yang Collins, Christin Behlmann, Andrea Lemmers, Richard J. L. F. van der Maarel, Silvère M. Laine, Regina Ghosh, Partha S. Darras, Basil T. Zingariello, Carla D. Pacak, Christina A. Kunkel, Louis M. Kang, Peter B. Ann Clin Transl Neurol Brief Communications Many individuals with muscular dystrophies remain genetically undiagnosed despite clinical diagnostic testing, including exome sequencing. Some may harbor previously undetected structural variants (SVs) or cryptic splice sites. We enrolled 10 unrelated families: nine had muscular dystrophy but lacked complete genetic diagnoses and one had an asymptomatic DMD duplication. Nanopore genomic long‐read sequencing identified previously undetected pathogenic variants in four individuals: an SV in DMD, an SV in LAMA2, and two single nucleotide variants in DMD that alter splicing. The DMD duplication in the asymptomatic individual was in tandem. Nanopore sequencing may help streamline genetic diagnostic approaches for muscular dystrophy. John Wiley and Sons Inc. 2022-06-23 /pmc/articles/PMC9380148/ /pubmed/35734998 http://dx.doi.org/10.1002/acn3.51612 Text en © 2022 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Brief Communications
Bruels, Christine C.
Littel, Hannah R.
Daugherty, Audrey L.
Stafki, Seth
Estrella, Elicia A.
McGaughy, Emily S.
Truong, Don
Badalamenti, Jonathan P.
Pais, Lynn
Ganesh, Vijay S.
O'Donnell‐Luria, Anne
Stalker, Heather J.
Wang, Yang
Collins, Christin
Behlmann, Andrea
Lemmers, Richard J. L. F.
van der Maarel, Silvère M.
Laine, Regina
Ghosh, Partha S.
Darras, Basil T.
Zingariello, Carla D.
Pacak, Christina A.
Kunkel, Louis M.
Kang, Peter B.
Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title_full Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title_fullStr Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title_full_unstemmed Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title_short Diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
title_sort diagnostic capabilities of nanopore long‐read sequencing in muscular dystrophy
topic Brief Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9380148/
https://www.ncbi.nlm.nih.gov/pubmed/35734998
http://dx.doi.org/10.1002/acn3.51612
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