Cargando…

Identifying essential proteins from protein–protein interaction networks based on influence maximization

BACKGROUND: Essential proteins are indispensable to the development and survival of cells. The identification of essential proteins not only is helpful for the understanding of the minimal requirements for cell survival, but also has practical significance in disease diagnosis, drug design and medic...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xu, Weixia, Dong, Yunfeng, Guan, Jihong, Zhou, Shuigeng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9380286/ https://www.ncbi.nlm.nih.gov/pubmed/35974329 http://dx.doi.org/10.1186/s12859-022-04874-w

Ejemplares similares

Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks
por: Xiong, Wei, et al.
Publicado: (2013)

PCGAN: a generative approach for protein complex identification from protein interaction networks
por: Pan, Yuliang, et al.
Publicado: (2023)

Prediction of protein-protein interaction sites using an ensemble method
por: Deng, Lei, et al.
Publicado: (2009)

An effective approach to detecting both small and large complexes from protein-protein interaction networks
por: Xu, Bin, et al.
Publicado: (2017)

Protein–protein interaction prediction based on ordinal regression and recurrent convolutional neural networks
por: Xu, Weixia, et al.
Publicado: (2021)

Fusing multiple protein-protein similarity networks to effectively predict lncRNA-protein interactions
por: Zheng, Xiaoxiong, et al.
Publicado: (2017)

Computationally identifying hot spots in protein-DNA binding interfaces using an ensemble approach
por: Pan, Yuliang, et al.
Publicado: (2020)

CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
por: Xu, Ying, et al.
Publicado: (2017)

A semi-supervised boosting SVM for predicting hot spots at protein-protein Interfaces
por: Xu, Bin, et al.
Publicado: (2012)

Improving compound–protein interaction prediction by building up highly credible negative samples
por: Liu, Hui, et al.
Publicado: (2015)

PredHS: a web server for predicting protein–protein interaction hot spots by using structural neighborhood properties
por: Deng, Lei, et al.
Publicado: (2014)

Selecting high-quality negative samples for effectively predicting protein-RNA interactions
por: Cheng, Zhanzhan, et al.
Publicado: (2017)

Effective drug–target interaction prediction with mutual interaction neural network
por: Li, Fei, et al.
Publicado: (2022)

Maximizing cohesion and separation for detecting protein functional modules in protein-protein interaction networks
por: Ying, Kuo-Ching, et al.
Publicado: (2020)

Identification of Essential Proteins Based on Ranking Edge-Weights in Protein-Protein Interaction Networks
por: Wang, Yan, et al.
Publicado: (2014)

Identifying Hierarchical and Overlapping Protein Complexes Based on Essential Protein-Protein Interactions and “Seed-Expanding” Method
por: Ren, Jun, et al.
Publicado: (2014)

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks
por: Liu, Xiaoxia, et al.
Publicado: (2018)

Influences of degree inhomogeneity on average path length and random walks in disassortative scale-free networks
por: Zhang, Zhongzhi, et al.
Publicado: (2009)

A New Method for Identifying Essential Proteins Based on Network Topology Properties and Protein Complexes
por: Qin, Chao, et al.
Publicado: (2016)

A Novel Method for Identifying Essential Genes by Fusing Dynamic Protein–Protein Interactive Networks
por: Zhang, Fengyu, et al.
Publicado: (2019)

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks
por: Peng, Wei, et al.
Publicado: (2012)

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks
por: Folador, Edson Luiz, et al.
Publicado: (2016)

A seed expansion-based method to identify essential proteins by integrating protein–protein interaction sub-networks and multiple biological characteristics
por: Zhao, He, et al.
Publicado: (2023)

Identifying protein complexes based on density and modularity in protein-protein interaction network
por: Ren, Jun, et al.
Publicado: (2013)

Identifying essential proteins in dynamic protein networks based on an improved h-index algorithm
por: Dai, Caiyan, et al.
Publicado: (2020)

Determining modular organization of protein interaction networks by maximizing modularity density
por: Zhang, Shihua, et al.
Publicado: (2010)

A new method for enhancer prediction based on deep belief network
por: Bu, Hongda, et al.
Publicado: (2017)

Identifying Chemicals with Potential Therapy of HIV Based on Protein-Protein and Protein-Chemical Interaction Network
por: Li, Bi-Qing, et al.
Publicado: (2013)

Divide-and-conquer Tournament on Social Networks
por: Wang, Jiasheng, et al.
Publicado: (2017)

Classifying early and late mild cognitive impairment stages of Alzheimer’s disease by fusing default mode networks extracted with multiple seeds
por: Pei, Shengbing, et al.
Publicado: (2018)

Ontology integration to identify protein complex in protein interaction networks
por: Xu, Bo, et al.
Publicado: (2011)

DEEPSEN: a convolutional neural network based method for super-enhancer prediction
por: Bu, Hongda, et al.
Publicado: (2019)

Identifying network biomarkers based on protein-protein interactions and expression data
por: Xin, Jingxue, et al.
Publicado: (2015)

Maximal Clique Based Influence Maximization in Networks
por: Mhadhbi, Nizar, et al.
Publicado: (2020)

Network Embedding the Protein–Protein Interaction Network for Human Essential Genes Identification
por: Dai, Wei, et al.
Publicado: (2020)

Essentiality and centrality in protein interaction networks revisited
por: Khuri, Sawsan, et al.
Publicado: (2015)

Method for Identifying Essential Proteins by Key Features of Proteins in a Novel Protein-Domain Network
por: He, Xin, et al.
Publicado: (2021)

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
por: Tian, Wenhong, et al.
Publicado: (2013)

Similarity evaluation of DNA sequences based on frequent patterns and entropy
por: Xie, Xiaojing, et al.
Publicado: (2015)

Construction and analysis of the protein-protein interaction network related to essential hypertension
por: Ran, Jihua, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_5t2qhiq2hebvi8drbs4if1r9h0