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Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools

We present an automated method that maps surface reaction pathways with no experimental data and with minimal human interventions. In this method, bias potentials promoting surface reactions are applied to enable statistical samplings of the surface reaction within the timescale of ab initio molecul...

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Detalles Bibliográficos
Autores principales: Hirai, Hirotoshi, Jinnouchi, Ryosuke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9382359/
https://www.ncbi.nlm.nih.gov/pubmed/36090391
http://dx.doi.org/10.1039/d2ra04343b
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author Hirai, Hirotoshi
Jinnouchi, Ryosuke
author_facet Hirai, Hirotoshi
Jinnouchi, Ryosuke
author_sort Hirai, Hirotoshi
collection PubMed
description We present an automated method that maps surface reaction pathways with no experimental data and with minimal human interventions. In this method, bias potentials promoting surface reactions are applied to enable statistical samplings of the surface reaction within the timescale of ab initio molecular dynamics (MD) simulations, and elementary reactions are extracted automatically using an extension of the method constructed for gas- or liquid-phase reactions. By converting the extracted elementary reaction data to directed graph data, MD trajectories can be efficiently mapped onto reaction pathways using a network analysis tool. To demonstrate the power of the method, it was applied to the steam reforming of methane on the Rh(111) surface and to propane reforming on the Pt(111) and Pt(3)Sn(111) surfaces. We discover new energetically favorable pathways for both reactions and reproduce the experimentally-observed materials-dependence of the surface reaction activity and the selectivity for the propane reforming reactions.
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spelling pubmed-93823592022-09-08 Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools Hirai, Hirotoshi Jinnouchi, Ryosuke RSC Adv Chemistry We present an automated method that maps surface reaction pathways with no experimental data and with minimal human interventions. In this method, bias potentials promoting surface reactions are applied to enable statistical samplings of the surface reaction within the timescale of ab initio molecular dynamics (MD) simulations, and elementary reactions are extracted automatically using an extension of the method constructed for gas- or liquid-phase reactions. By converting the extracted elementary reaction data to directed graph data, MD trajectories can be efficiently mapped onto reaction pathways using a network analysis tool. To demonstrate the power of the method, it was applied to the steam reforming of methane on the Rh(111) surface and to propane reforming on the Pt(111) and Pt(3)Sn(111) surfaces. We discover new energetically favorable pathways for both reactions and reproduce the experimentally-observed materials-dependence of the surface reaction activity and the selectivity for the propane reforming reactions. The Royal Society of Chemistry 2022-08-17 /pmc/articles/PMC9382359/ /pubmed/36090391 http://dx.doi.org/10.1039/d2ra04343b Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Hirai, Hirotoshi
Jinnouchi, Ryosuke
Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title_full Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title_fullStr Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title_full_unstemmed Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title_short Discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
title_sort discovering surface reaction pathways using accelerated molecular dynamics and network analysis tools
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9382359/
https://www.ncbi.nlm.nih.gov/pubmed/36090391
http://dx.doi.org/10.1039/d2ra04343b
work_keys_str_mv AT hiraihirotoshi discoveringsurfacereactionpathwaysusingacceleratedmoleculardynamicsandnetworkanalysistools
AT jinnouchiryosuke discoveringsurfacereactionpathwaysusingacceleratedmoleculardynamicsandnetworkanalysistools