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Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate sub...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9384705/ https://www.ncbi.nlm.nih.gov/pubmed/36092997 http://dx.doi.org/10.1039/d2sc03205h |
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author | Mahato, Chiranjit Menon, Sneha Singh, Abhishek Afrose, Syed Pavel Mondal, Jagannath Das, Dibyendu |
author_facet | Mahato, Chiranjit Menon, Sneha Singh, Abhishek Afrose, Syed Pavel Mondal, Jagannath Das, Dibyendu |
author_sort | Mahato, Chiranjit |
collection | PubMed |
description | Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate substrate binding and process kinetically unfavourable chemical transformations. The solvent-exposed guanidinium and imidazole moieties on the cross-β microphases synergistically bind to polarise and hydrolyse diverse kinetically stable model substrates of nucleases and phosphatase. Mutation of either histidine or arginine results in a drastic decline in the rate of hydrolysis. These results not only support the argument of short amyloid peptides as the earliest protein folds but also suggest their interactions with nucleic acid congeners, foreshadowing the mutualistic biopolymer relationships that fueled the chemical emergence of life. |
format | Online Article Text |
id | pubmed-9384705 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-93847052022-09-08 Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity Mahato, Chiranjit Menon, Sneha Singh, Abhishek Afrose, Syed Pavel Mondal, Jagannath Das, Dibyendu Chem Sci Chemistry Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate substrate binding and process kinetically unfavourable chemical transformations. The solvent-exposed guanidinium and imidazole moieties on the cross-β microphases synergistically bind to polarise and hydrolyse diverse kinetically stable model substrates of nucleases and phosphatase. Mutation of either histidine or arginine results in a drastic decline in the rate of hydrolysis. These results not only support the argument of short amyloid peptides as the earliest protein folds but also suggest their interactions with nucleic acid congeners, foreshadowing the mutualistic biopolymer relationships that fueled the chemical emergence of life. The Royal Society of Chemistry 2022-07-18 /pmc/articles/PMC9384705/ /pubmed/36092997 http://dx.doi.org/10.1039/d2sc03205h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Mahato, Chiranjit Menon, Sneha Singh, Abhishek Afrose, Syed Pavel Mondal, Jagannath Das, Dibyendu Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title | Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title_full | Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title_fullStr | Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title_full_unstemmed | Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title_short | Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
title_sort | short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9384705/ https://www.ncbi.nlm.nih.gov/pubmed/36092997 http://dx.doi.org/10.1039/d2sc03205h |
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