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Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity

Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate sub...

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Autores principales: Mahato, Chiranjit, Menon, Sneha, Singh, Abhishek, Afrose, Syed Pavel, Mondal, Jagannath, Das, Dibyendu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9384705/
https://www.ncbi.nlm.nih.gov/pubmed/36092997
http://dx.doi.org/10.1039/d2sc03205h
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author Mahato, Chiranjit
Menon, Sneha
Singh, Abhishek
Afrose, Syed Pavel
Mondal, Jagannath
Das, Dibyendu
author_facet Mahato, Chiranjit
Menon, Sneha
Singh, Abhishek
Afrose, Syed Pavel
Mondal, Jagannath
Das, Dibyendu
author_sort Mahato, Chiranjit
collection PubMed
description Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate substrate binding and process kinetically unfavourable chemical transformations. The solvent-exposed guanidinium and imidazole moieties on the cross-β microphases synergistically bind to polarise and hydrolyse diverse kinetically stable model substrates of nucleases and phosphatase. Mutation of either histidine or arginine results in a drastic decline in the rate of hydrolysis. These results not only support the argument of short amyloid peptides as the earliest protein folds but also suggest their interactions with nucleic acid congeners, foreshadowing the mutualistic biopolymer relationships that fueled the chemical emergence of life.
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spelling pubmed-93847052022-09-08 Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity Mahato, Chiranjit Menon, Sneha Singh, Abhishek Afrose, Syed Pavel Mondal, Jagannath Das, Dibyendu Chem Sci Chemistry Herein, we report that short peptides are capable of exploiting their anti-parallel registry to access cross-β stacks to expose more than one catalytic residue, exhibiting the traits of advanced binding pockets of enzymes. Binding pockets decorated with more than one catalytic residue facilitate substrate binding and process kinetically unfavourable chemical transformations. The solvent-exposed guanidinium and imidazole moieties on the cross-β microphases synergistically bind to polarise and hydrolyse diverse kinetically stable model substrates of nucleases and phosphatase. Mutation of either histidine or arginine results in a drastic decline in the rate of hydrolysis. These results not only support the argument of short amyloid peptides as the earliest protein folds but also suggest their interactions with nucleic acid congeners, foreshadowing the mutualistic biopolymer relationships that fueled the chemical emergence of life. The Royal Society of Chemistry 2022-07-18 /pmc/articles/PMC9384705/ /pubmed/36092997 http://dx.doi.org/10.1039/d2sc03205h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Mahato, Chiranjit
Menon, Sneha
Singh, Abhishek
Afrose, Syed Pavel
Mondal, Jagannath
Das, Dibyendu
Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title_full Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title_fullStr Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title_full_unstemmed Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title_short Short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
title_sort short peptide-based cross-β amyloids exploit dual residues for phosphoesterase like activity
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9384705/
https://www.ncbi.nlm.nih.gov/pubmed/36092997
http://dx.doi.org/10.1039/d2sc03205h
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