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A network simplification approach to ease topological studies about the food-web architecture

Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to...

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Detalles Bibliográficos
Autores principales: Gini, Andrea, Re, Simona, Facchini, Angelo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385703/
https://www.ncbi.nlm.nih.gov/pubmed/35977970
http://dx.doi.org/10.1038/s41598-022-17508-1
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author Gini, Andrea
Re, Simona
Facchini, Angelo
author_facet Gini, Andrea
Re, Simona
Facchini, Angelo
author_sort Gini, Andrea
collection PubMed
description Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to ease the gathering of the information by simplifying the collection of data with a taxonomic key. We test how well the topology of three different food webs retain their structure at the resolution of the nodes across distinct levels of simplification, and we estimate how community detection could be impacted by this strategy. The first level of simplification retains most of the general topological indices; betweenness and trophic levels seem to be consistent and robust even at the higher levels of simplification. This result suggests that generalisation and standardisation, as a good practice in food webs science, could benefit the community, both increasing the amount of open data available and the comparison among them, thus providing support especially for scientists that are new in this field and for exploratory analysis.
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spelling pubmed-93857032022-08-19 A network simplification approach to ease topological studies about the food-web architecture Gini, Andrea Re, Simona Facchini, Angelo Sci Rep Article Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to ease the gathering of the information by simplifying the collection of data with a taxonomic key. We test how well the topology of three different food webs retain their structure at the resolution of the nodes across distinct levels of simplification, and we estimate how community detection could be impacted by this strategy. The first level of simplification retains most of the general topological indices; betweenness and trophic levels seem to be consistent and robust even at the higher levels of simplification. This result suggests that generalisation and standardisation, as a good practice in food webs science, could benefit the community, both increasing the amount of open data available and the comparison among them, thus providing support especially for scientists that are new in this field and for exploratory analysis. Nature Publishing Group UK 2022-08-17 /pmc/articles/PMC9385703/ /pubmed/35977970 http://dx.doi.org/10.1038/s41598-022-17508-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Gini, Andrea
Re, Simona
Facchini, Angelo
A network simplification approach to ease topological studies about the food-web architecture
title A network simplification approach to ease topological studies about the food-web architecture
title_full A network simplification approach to ease topological studies about the food-web architecture
title_fullStr A network simplification approach to ease topological studies about the food-web architecture
title_full_unstemmed A network simplification approach to ease topological studies about the food-web architecture
title_short A network simplification approach to ease topological studies about the food-web architecture
title_sort network simplification approach to ease topological studies about the food-web architecture
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385703/
https://www.ncbi.nlm.nih.gov/pubmed/35977970
http://dx.doi.org/10.1038/s41598-022-17508-1
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