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A network simplification approach to ease topological studies about the food-web architecture
Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385703/ https://www.ncbi.nlm.nih.gov/pubmed/35977970 http://dx.doi.org/10.1038/s41598-022-17508-1 |
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author | Gini, Andrea Re, Simona Facchini, Angelo |
author_facet | Gini, Andrea Re, Simona Facchini, Angelo |
author_sort | Gini, Andrea |
collection | PubMed |
description | Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to ease the gathering of the information by simplifying the collection of data with a taxonomic key. We test how well the topology of three different food webs retain their structure at the resolution of the nodes across distinct levels of simplification, and we estimate how community detection could be impacted by this strategy. The first level of simplification retains most of the general topological indices; betweenness and trophic levels seem to be consistent and robust even at the higher levels of simplification. This result suggests that generalisation and standardisation, as a good practice in food webs science, could benefit the community, both increasing the amount of open data available and the comparison among them, thus providing support especially for scientists that are new in this field and for exploratory analysis. |
format | Online Article Text |
id | pubmed-9385703 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93857032022-08-19 A network simplification approach to ease topological studies about the food-web architecture Gini, Andrea Re, Simona Facchini, Angelo Sci Rep Article Food webs studies are intrinsically complex and time-consuming. Network data about trophic interaction across different large locations and ecosystems are scarce in comparison with general ecological data, especially if we consider terrestrial habitats. Here we present a complex network strategy to ease the gathering of the information by simplifying the collection of data with a taxonomic key. We test how well the topology of three different food webs retain their structure at the resolution of the nodes across distinct levels of simplification, and we estimate how community detection could be impacted by this strategy. The first level of simplification retains most of the general topological indices; betweenness and trophic levels seem to be consistent and robust even at the higher levels of simplification. This result suggests that generalisation and standardisation, as a good practice in food webs science, could benefit the community, both increasing the amount of open data available and the comparison among them, thus providing support especially for scientists that are new in this field and for exploratory analysis. Nature Publishing Group UK 2022-08-17 /pmc/articles/PMC9385703/ /pubmed/35977970 http://dx.doi.org/10.1038/s41598-022-17508-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Gini, Andrea Re, Simona Facchini, Angelo A network simplification approach to ease topological studies about the food-web architecture |
title | A network simplification approach to ease topological studies about the food-web architecture |
title_full | A network simplification approach to ease topological studies about the food-web architecture |
title_fullStr | A network simplification approach to ease topological studies about the food-web architecture |
title_full_unstemmed | A network simplification approach to ease topological studies about the food-web architecture |
title_short | A network simplification approach to ease topological studies about the food-web architecture |
title_sort | network simplification approach to ease topological studies about the food-web architecture |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385703/ https://www.ncbi.nlm.nih.gov/pubmed/35977970 http://dx.doi.org/10.1038/s41598-022-17508-1 |
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