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Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm
Biophysical models contain a large number of parameters, while the spiking characteristics of neurons are related to a few key parameters. For thalamic neurons, relay reliability is an important characteristic that affects Parkinson's state. This paper proposes a method to fit key parameters of...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385711/ https://www.ncbi.nlm.nih.gov/pubmed/35977977 http://dx.doi.org/10.1038/s41598-022-18267-9 |
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author | Yuan, Chunhua Li, Xiangyu |
author_facet | Yuan, Chunhua Li, Xiangyu |
author_sort | Yuan, Chunhua |
collection | PubMed |
description | Biophysical models contain a large number of parameters, while the spiking characteristics of neurons are related to a few key parameters. For thalamic neurons, relay reliability is an important characteristic that affects Parkinson's state. This paper proposes a method to fit key parameters of the model based on the spiking characteristics of neurons, and improves the traditional particle swarm optimization algorithm. That is, a nonlinear concave function and a Logistic chaotic mapping are combined to adjust the inertia weight of particles to avoid the particle falling into a local optimum in the search process or appearing premature convergence. In this paper, three parameters that play an important role in Parkinson's state of the thalamic cell model are selected and fitted by the improved particle swarm optimization algorithm. Using the fitted parameters to reconstruct the neuron model can predict the spiking trajectories well, which verifies the effectiveness of the fitting method. By comparing the fitting results with other particle swarm optimization algorithms, it is shown that the proposed particle swarm optimization algorithm can better avoid local optima and converge to the optimal values quickly. |
format | Online Article Text |
id | pubmed-9385711 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93857112022-08-19 Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm Yuan, Chunhua Li, Xiangyu Sci Rep Article Biophysical models contain a large number of parameters, while the spiking characteristics of neurons are related to a few key parameters. For thalamic neurons, relay reliability is an important characteristic that affects Parkinson's state. This paper proposes a method to fit key parameters of the model based on the spiking characteristics of neurons, and improves the traditional particle swarm optimization algorithm. That is, a nonlinear concave function and a Logistic chaotic mapping are combined to adjust the inertia weight of particles to avoid the particle falling into a local optimum in the search process or appearing premature convergence. In this paper, three parameters that play an important role in Parkinson's state of the thalamic cell model are selected and fitted by the improved particle swarm optimization algorithm. Using the fitted parameters to reconstruct the neuron model can predict the spiking trajectories well, which verifies the effectiveness of the fitting method. By comparing the fitting results with other particle swarm optimization algorithms, it is shown that the proposed particle swarm optimization algorithm can better avoid local optima and converge to the optimal values quickly. Nature Publishing Group UK 2022-08-17 /pmc/articles/PMC9385711/ /pubmed/35977977 http://dx.doi.org/10.1038/s41598-022-18267-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Yuan, Chunhua Li, Xiangyu Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title | Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title_full | Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title_fullStr | Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title_full_unstemmed | Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title_short | Fitting of TC model according to key parameters affecting Parkinson's state based on improved particle swarm optimization algorithm |
title_sort | fitting of tc model according to key parameters affecting parkinson's state based on improved particle swarm optimization algorithm |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385711/ https://www.ncbi.nlm.nih.gov/pubmed/35977977 http://dx.doi.org/10.1038/s41598-022-18267-9 |
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