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Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images

At the end of 2019, a novel coronavirus, COVID-19, was ravaging the world, wreaking havoc on public health and the global economy. Today, although Reverse Transcription-Polymerase Chain Reaction (RT-PCR) is the gold standard for COVID-19 clinical diagnosis, it is a time-consuming and labor-intensive...

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Detalles Bibliográficos
Autores principales: Sun, Wanchun, Feng, Xin, Liu, Jingyao, Ma, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385774/
https://www.ncbi.nlm.nih.gov/pubmed/35996574
http://dx.doi.org/10.1016/j.bspc.2022.104099
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author Sun, Wanchun
Feng, Xin
Liu, Jingyao
Ma, Hui
author_facet Sun, Wanchun
Feng, Xin
Liu, Jingyao
Ma, Hui
author_sort Sun, Wanchun
collection PubMed
description At the end of 2019, a novel coronavirus, COVID-19, was ravaging the world, wreaking havoc on public health and the global economy. Today, although Reverse Transcription-Polymerase Chain Reaction (RT-PCR) is the gold standard for COVID-19 clinical diagnosis, it is a time-consuming and labor-intensive procedure. Simultaneously, an increasing number of individuals are seeking for better alternatives to RT-PCR. As a result, automated identification of COVID-19 lung infection in computed tomography (CT) images may help traditional diagnostic approaches in determining the severity of the disease. Unfortunately, a shortage of labeled training sets makes using AI deep learning algorithms to accurately segregate diseased regions in CT scan challenging. We design a simple and effective weakly supervised learning strategy for COVID-19 CT image segmentation to overcome the segmentation issue in the absence of adequate labeled data, namely LLC-Net. Unlike others weakly supervised work that uses a complex training procedure, our LLC-Net is relatively easy and repeatable. We propose a Local Self-Coherence Mechanism to accomplish label propagation based on lesion area labeling characteristics for weak labels that cannot offer comprehensive lesion areas, hence forecasting a more complete lesion area. Secondly, when the COVID-19 training samples are insufficient, the Scale Transform for Self-Correlation is designed to optimize the robustness of the model to ensure that the CT images are consistent in the prediction results from different angles. Finally, in order to constrain the segmentation accuracy of the lesion area, the Lesion Infection Edge Attention Module is used to improve the information expression ability of edge modeling. Experiments on public datasets demonstrate that our method is more effective than other weakly supervised methods and achieves a new state-of-the-art performance.
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spelling pubmed-93857742022-08-18 Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images Sun, Wanchun Feng, Xin Liu, Jingyao Ma, Hui Biomed Signal Process Control Article At the end of 2019, a novel coronavirus, COVID-19, was ravaging the world, wreaking havoc on public health and the global economy. Today, although Reverse Transcription-Polymerase Chain Reaction (RT-PCR) is the gold standard for COVID-19 clinical diagnosis, it is a time-consuming and labor-intensive procedure. Simultaneously, an increasing number of individuals are seeking for better alternatives to RT-PCR. As a result, automated identification of COVID-19 lung infection in computed tomography (CT) images may help traditional diagnostic approaches in determining the severity of the disease. Unfortunately, a shortage of labeled training sets makes using AI deep learning algorithms to accurately segregate diseased regions in CT scan challenging. We design a simple and effective weakly supervised learning strategy for COVID-19 CT image segmentation to overcome the segmentation issue in the absence of adequate labeled data, namely LLC-Net. Unlike others weakly supervised work that uses a complex training procedure, our LLC-Net is relatively easy and repeatable. We propose a Local Self-Coherence Mechanism to accomplish label propagation based on lesion area labeling characteristics for weak labels that cannot offer comprehensive lesion areas, hence forecasting a more complete lesion area. Secondly, when the COVID-19 training samples are insufficient, the Scale Transform for Self-Correlation is designed to optimize the robustness of the model to ensure that the CT images are consistent in the prediction results from different angles. Finally, in order to constrain the segmentation accuracy of the lesion area, the Lesion Infection Edge Attention Module is used to improve the information expression ability of edge modeling. Experiments on public datasets demonstrate that our method is more effective than other weakly supervised methods and achieves a new state-of-the-art performance. Elsevier Ltd. 2023-01 2022-08-18 /pmc/articles/PMC9385774/ /pubmed/35996574 http://dx.doi.org/10.1016/j.bspc.2022.104099 Text en © 2022 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Sun, Wanchun
Feng, Xin
Liu, Jingyao
Ma, Hui
Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title_full Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title_fullStr Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title_full_unstemmed Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title_short Weakly supervised segmentation of COVID-19 infection with local lesion coherence on CT images
title_sort weakly supervised segmentation of covid-19 infection with local lesion coherence on ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9385774/
https://www.ncbi.nlm.nih.gov/pubmed/35996574
http://dx.doi.org/10.1016/j.bspc.2022.104099
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