Cargando…
Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis
Chinese jujube (Ziziphus jujuba) is a vital economic tree native to China. Jujube fruit with abundant L-Ascorbic Acid (AsA) is an ideal material for studying the mechanism of AsA biosynthesis and metabolism. However, the key transcription factors regulating AsA anabolism in jujube have not been repo...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9386341/ https://www.ncbi.nlm.nih.gov/pubmed/35991405 http://dx.doi.org/10.3389/fpls.2022.950103 |
_version_ | 1784769787573829632 |
---|---|
author | Lu, Dongye Wu, Yang Pan, Qinghua Zhang, Yuping Qi, Yuanyong Bao, Wenhui |
author_facet | Lu, Dongye Wu, Yang Pan, Qinghua Zhang, Yuping Qi, Yuanyong Bao, Wenhui |
author_sort | Lu, Dongye |
collection | PubMed |
description | Chinese jujube (Ziziphus jujuba) is a vital economic tree native to China. Jujube fruit with abundant L-Ascorbic Acid (AsA) is an ideal material for studying the mechanism of AsA biosynthesis and metabolism. However, the key transcription factors regulating AsA anabolism in jujube have not been reported. Here, we used jujube variety “Mazao” as the experimental material, conducted an integrative analysis of transcriptome and metabolome to investigate changes in differential genes and metabolites, and find the key genes regulating AsA during jujube fruit growth. The results showed that AsA was mostly synthesized in the young stage and enlargement stage, ZjMDHAR gene takes an important part in the AsA recycling. Three gene networks/modules were highly correlated with AsA, among them, three genes were identified as candidates controlling AsA, including ZjERF17 (LOC107404975), ZjbZIP9 (LOC107406320), and ZjGBF4 (LOC107421670). These results provide new directions and insights for further study on the regulation mechanism of AsA in jujube. |
format | Online Article Text |
id | pubmed-9386341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93863412022-08-19 Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis Lu, Dongye Wu, Yang Pan, Qinghua Zhang, Yuping Qi, Yuanyong Bao, Wenhui Front Plant Sci Plant Science Chinese jujube (Ziziphus jujuba) is a vital economic tree native to China. Jujube fruit with abundant L-Ascorbic Acid (AsA) is an ideal material for studying the mechanism of AsA biosynthesis and metabolism. However, the key transcription factors regulating AsA anabolism in jujube have not been reported. Here, we used jujube variety “Mazao” as the experimental material, conducted an integrative analysis of transcriptome and metabolome to investigate changes in differential genes and metabolites, and find the key genes regulating AsA during jujube fruit growth. The results showed that AsA was mostly synthesized in the young stage and enlargement stage, ZjMDHAR gene takes an important part in the AsA recycling. Three gene networks/modules were highly correlated with AsA, among them, three genes were identified as candidates controlling AsA, including ZjERF17 (LOC107404975), ZjbZIP9 (LOC107406320), and ZjGBF4 (LOC107421670). These results provide new directions and insights for further study on the regulation mechanism of AsA in jujube. Frontiers Media S.A. 2022-08-04 /pmc/articles/PMC9386341/ /pubmed/35991405 http://dx.doi.org/10.3389/fpls.2022.950103 Text en Copyright © 2022 Lu, Wu, Pan, Zhang, Qi and Bao. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Lu, Dongye Wu, Yang Pan, Qinghua Zhang, Yuping Qi, Yuanyong Bao, Wenhui Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title | Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title_full | Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title_fullStr | Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title_full_unstemmed | Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title_short | Identification of key genes controlling L-ascorbic acid during Jujube (Ziziphus jujuba Mill.) fruit development by integrating transcriptome and metabolome analysis |
title_sort | identification of key genes controlling l-ascorbic acid during jujube (ziziphus jujuba mill.) fruit development by integrating transcriptome and metabolome analysis |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9386341/ https://www.ncbi.nlm.nih.gov/pubmed/35991405 http://dx.doi.org/10.3389/fpls.2022.950103 |
work_keys_str_mv | AT ludongye identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis AT wuyang identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis AT panqinghua identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis AT zhangyuping identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis AT qiyuanyong identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis AT baowenhui identificationofkeygenescontrollinglascorbicacidduringjujubeziziphusjujubamillfruitdevelopmentbyintegratingtranscriptomeandmetabolomeanalysis |