Cargando…
HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis
Colorectal cancer (CRC) is the most common digestive tumor in the world and has a high mortality rate. The development and treatment of CRC are related to the immune microenvironment, but immune response-related prognostic biomarkers are lacking. In this study, we used The Cancer Genome Atlas (TCGA)...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9386429/ https://www.ncbi.nlm.nih.gov/pubmed/35992796 http://dx.doi.org/10.3389/fonc.2022.884474 |
_version_ | 1784769808637624320 |
---|---|
author | Wei, Fang-Ze Mei, Shi-Wen Wang, Zhi-Jie Chen, Jia-Nan Zhao, Fu-Qiang Li, Juan- Xiao, Ti-Xian Zhao, Wei Ma, Yun-Bin Yuan, Wei Liu, Qian |
author_facet | Wei, Fang-Ze Mei, Shi-Wen Wang, Zhi-Jie Chen, Jia-Nan Zhao, Fu-Qiang Li, Juan- Xiao, Ti-Xian Zhao, Wei Ma, Yun-Bin Yuan, Wei Liu, Qian |
author_sort | Wei, Fang-Ze |
collection | PubMed |
description | Colorectal cancer (CRC) is the most common digestive tumor in the world and has a high mortality rate. The development and treatment of CRC are related to the immune microenvironment, but immune response-related prognostic biomarkers are lacking. In this study, we used The Cancer Genome Atlas (TCGA) to explore the tumor microenvironment (TME) and weighted gene coexpression network analysis (WGCNA) to identify significant prognostic genes. We also identified differentially expressed genes in the TCGA data and explored immune-related genes and transcription factors (TFs). Then, we built a TF regulatory network and performed a comprehensive prognostic analysis of an lncRNA-associated competitive endogenous RNA network (ceRNA network) to build a prognostic model. CCR8 and HAMP were identified both in the WGCNA key module and as immune-related genes. HAMP had good prognostic value for CRC and was highly expressed in CRC tissues and had a negative correlation with CD4(+) T cells and M0 macrophages based on immunohistochemistry and immunofluorescence staining of clinical specimens.We found that HAMP had high prognostic and therapeutic target value for CRC and was associated with liver metastasis. These analysis results revealed that HAMP may be a candidate immune-related prognostic biomarker for CRC. |
format | Online Article Text |
id | pubmed-9386429 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93864292022-08-19 HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis Wei, Fang-Ze Mei, Shi-Wen Wang, Zhi-Jie Chen, Jia-Nan Zhao, Fu-Qiang Li, Juan- Xiao, Ti-Xian Zhao, Wei Ma, Yun-Bin Yuan, Wei Liu, Qian Front Oncol Oncology Colorectal cancer (CRC) is the most common digestive tumor in the world and has a high mortality rate. The development and treatment of CRC are related to the immune microenvironment, but immune response-related prognostic biomarkers are lacking. In this study, we used The Cancer Genome Atlas (TCGA) to explore the tumor microenvironment (TME) and weighted gene coexpression network analysis (WGCNA) to identify significant prognostic genes. We also identified differentially expressed genes in the TCGA data and explored immune-related genes and transcription factors (TFs). Then, we built a TF regulatory network and performed a comprehensive prognostic analysis of an lncRNA-associated competitive endogenous RNA network (ceRNA network) to build a prognostic model. CCR8 and HAMP were identified both in the WGCNA key module and as immune-related genes. HAMP had good prognostic value for CRC and was highly expressed in CRC tissues and had a negative correlation with CD4(+) T cells and M0 macrophages based on immunohistochemistry and immunofluorescence staining of clinical specimens.We found that HAMP had high prognostic and therapeutic target value for CRC and was associated with liver metastasis. These analysis results revealed that HAMP may be a candidate immune-related prognostic biomarker for CRC. Frontiers Media S.A. 2022-08-05 /pmc/articles/PMC9386429/ /pubmed/35992796 http://dx.doi.org/10.3389/fonc.2022.884474 Text en Copyright © 2022 Wei, Mei, Wang, Chen, Zhao, Li, Xiao, Zhao, Ma, Yuan and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Wei, Fang-Ze Mei, Shi-Wen Wang, Zhi-Jie Chen, Jia-Nan Zhao, Fu-Qiang Li, Juan- Xiao, Ti-Xian Zhao, Wei Ma, Yun-Bin Yuan, Wei Liu, Qian HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title | HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title_full | HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title_fullStr | HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title_full_unstemmed | HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title_short | HAMP as a Prognostic Biomarker for Colorectal Cancer Based on Tumor Microenvironment Analysis |
title_sort | hamp as a prognostic biomarker for colorectal cancer based on tumor microenvironment analysis |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9386429/ https://www.ncbi.nlm.nih.gov/pubmed/35992796 http://dx.doi.org/10.3389/fonc.2022.884474 |
work_keys_str_mv | AT weifangze hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT meishiwen hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT wangzhijie hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT chenjianan hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT zhaofuqiang hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT lijuan hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT xiaotixian hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT zhaowei hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT mayunbin hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT yuanwei hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis AT liuqian hampasaprognosticbiomarkerforcolorectalcancerbasedontumormicroenvironmentanalysis |