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Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning

Primary open-angle glaucoma (POAG) is a leading cause of irreversible blindness worldwide. Although deep learning methods have been proposed to diagnose POAG, it remains challenging to develop a robust and explainable algorithm to automatically facilitate the downstream diagnostic tasks. In this stu...

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Autores principales: Lin, Mingquan, Hou, Bojian, Liu, Lei, Gordon, Mae, Kass, Michael, Wang, Fei, Van Tassel, Sarah H., Peng, Yifan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9388536/
https://www.ncbi.nlm.nih.gov/pubmed/35982106
http://dx.doi.org/10.1038/s41598-022-17753-4
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author Lin, Mingquan
Hou, Bojian
Liu, Lei
Gordon, Mae
Kass, Michael
Wang, Fei
Van Tassel, Sarah H.
Peng, Yifan
author_facet Lin, Mingquan
Hou, Bojian
Liu, Lei
Gordon, Mae
Kass, Michael
Wang, Fei
Van Tassel, Sarah H.
Peng, Yifan
author_sort Lin, Mingquan
collection PubMed
description Primary open-angle glaucoma (POAG) is a leading cause of irreversible blindness worldwide. Although deep learning methods have been proposed to diagnose POAG, it remains challenging to develop a robust and explainable algorithm to automatically facilitate the downstream diagnostic tasks. In this study, we present an automated classification algorithm, GlaucomaNet, to identify POAG using variable fundus photographs from different populations and settings. GlaucomaNet consists of two convolutional neural networks to simulate the human grading process: learning the discriminative features and fusing the features for grading. We evaluated GlaucomaNet on two datasets: Ocular Hypertension Treatment Study (OHTS) participants and the Large-scale Attention-based Glaucoma (LAG) dataset. GlaucomaNet achieved the highest AUC of 0.904 and 0.997 for POAG diagnosis on OHTS and LAG datasets. An ensemble of network architectures further improved diagnostic accuracy. By simulating the human grading process, GlaucomaNet demonstrated high accuracy with increased transparency in POAG diagnosis (comprehensiveness scores of 97% and 36%). These methods also address two well-known challenges in the field: the need for increased image data diversity and relying heavily on perimetry for POAG diagnosis. These results highlight the potential of deep learning to assist and enhance clinical POAG diagnosis. GlaucomaNet is publicly available on https://github.com/bionlplab/GlaucomaNet.
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spelling pubmed-93885362022-08-20 Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning Lin, Mingquan Hou, Bojian Liu, Lei Gordon, Mae Kass, Michael Wang, Fei Van Tassel, Sarah H. Peng, Yifan Sci Rep Article Primary open-angle glaucoma (POAG) is a leading cause of irreversible blindness worldwide. Although deep learning methods have been proposed to diagnose POAG, it remains challenging to develop a robust and explainable algorithm to automatically facilitate the downstream diagnostic tasks. In this study, we present an automated classification algorithm, GlaucomaNet, to identify POAG using variable fundus photographs from different populations and settings. GlaucomaNet consists of two convolutional neural networks to simulate the human grading process: learning the discriminative features and fusing the features for grading. We evaluated GlaucomaNet on two datasets: Ocular Hypertension Treatment Study (OHTS) participants and the Large-scale Attention-based Glaucoma (LAG) dataset. GlaucomaNet achieved the highest AUC of 0.904 and 0.997 for POAG diagnosis on OHTS and LAG datasets. An ensemble of network architectures further improved diagnostic accuracy. By simulating the human grading process, GlaucomaNet demonstrated high accuracy with increased transparency in POAG diagnosis (comprehensiveness scores of 97% and 36%). These methods also address two well-known challenges in the field: the need for increased image data diversity and relying heavily on perimetry for POAG diagnosis. These results highlight the potential of deep learning to assist and enhance clinical POAG diagnosis. GlaucomaNet is publicly available on https://github.com/bionlplab/GlaucomaNet. Nature Publishing Group UK 2022-08-18 /pmc/articles/PMC9388536/ /pubmed/35982106 http://dx.doi.org/10.1038/s41598-022-17753-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lin, Mingquan
Hou, Bojian
Liu, Lei
Gordon, Mae
Kass, Michael
Wang, Fei
Van Tassel, Sarah H.
Peng, Yifan
Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title_full Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title_fullStr Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title_full_unstemmed Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title_short Automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
title_sort automated diagnosing primary open-angle glaucoma from fundus image by simulating human’s grading with deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9388536/
https://www.ncbi.nlm.nih.gov/pubmed/35982106
http://dx.doi.org/10.1038/s41598-022-17753-4
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