Cargando…

Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer

RNA guanine-7 methyltransferase (RNMT), in complex with FAM103A1, plays an important role in tumorigenesis and development. The aim of this study was to establish a prognostic model of RNMT and FAM103A1-based upstream microRNAs and explore its correlation with immune cell infiltration in breast canc...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Wenchuan, Zhang, Shuwan, Wang, Zhe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9389359/
https://www.ncbi.nlm.nih.gov/pubmed/35992830
http://dx.doi.org/10.3389/fonc.2022.929363
_version_ 1784770427994767360
author Zhang, Wenchuan
Zhang, Shuwan
Wang, Zhe
author_facet Zhang, Wenchuan
Zhang, Shuwan
Wang, Zhe
author_sort Zhang, Wenchuan
collection PubMed
description RNA guanine-7 methyltransferase (RNMT), in complex with FAM103A1, plays an important role in tumorigenesis and development. The aim of this study was to establish a prognostic model of RNMT and FAM103A1-based upstream microRNAs and explore its correlation with immune cell infiltration in breast cancer (BC) while investigating its potential prognostic value and verify the model by quantitative real-time polymerase chain reaction (qRT-PCR). The miRNA expression data upstream of the m7G methyltransferase complex RNMT/FAM103A1 in BC was obtained from The Cancer Genome Atlas and TargetScan databases. We performed univariate Cox regression, LASSO regression, Kaplan-Meier survival, and principal component analyses, along with risk prognostic modelling. Based on multivariate Cox regression analysis, a total of 12 m7G methyltransferase-related miRNAs were found. The model showed good accuracy for predicting the 1-, 3-,5-, and 10-year survival rates, and the areas under the curve were almost >0.7. To characterize the risk-level model constructed from 12 miRNAs, 12 differentially expressed mRNAs related to prognosis and immune infiltration were obtained. The prognosis of BC patients is well predicted by the risk model we constructed. This model is also closely related to immune infiltration, and new immunotherapy targets can be explored from this field.
format Online
Article
Text
id pubmed-9389359
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-93893592022-08-20 Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer Zhang, Wenchuan Zhang, Shuwan Wang, Zhe Front Oncol Oncology RNA guanine-7 methyltransferase (RNMT), in complex with FAM103A1, plays an important role in tumorigenesis and development. The aim of this study was to establish a prognostic model of RNMT and FAM103A1-based upstream microRNAs and explore its correlation with immune cell infiltration in breast cancer (BC) while investigating its potential prognostic value and verify the model by quantitative real-time polymerase chain reaction (qRT-PCR). The miRNA expression data upstream of the m7G methyltransferase complex RNMT/FAM103A1 in BC was obtained from The Cancer Genome Atlas and TargetScan databases. We performed univariate Cox regression, LASSO regression, Kaplan-Meier survival, and principal component analyses, along with risk prognostic modelling. Based on multivariate Cox regression analysis, a total of 12 m7G methyltransferase-related miRNAs were found. The model showed good accuracy for predicting the 1-, 3-,5-, and 10-year survival rates, and the areas under the curve were almost >0.7. To characterize the risk-level model constructed from 12 miRNAs, 12 differentially expressed mRNAs related to prognosis and immune infiltration were obtained. The prognosis of BC patients is well predicted by the risk model we constructed. This model is also closely related to immune infiltration, and new immunotherapy targets can be explored from this field. Frontiers Media S.A. 2022-08-05 /pmc/articles/PMC9389359/ /pubmed/35992830 http://dx.doi.org/10.3389/fonc.2022.929363 Text en Copyright © 2022 Zhang, Zhang and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhang, Wenchuan
Zhang, Shuwan
Wang, Zhe
Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title_full Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title_fullStr Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title_full_unstemmed Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title_short Prognostic value of 12 m7G methylation-related miRNA markers and their correlation with immune infiltration in breast cancer
title_sort prognostic value of 12 m7g methylation-related mirna markers and their correlation with immune infiltration in breast cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9389359/
https://www.ncbi.nlm.nih.gov/pubmed/35992830
http://dx.doi.org/10.3389/fonc.2022.929363
work_keys_str_mv AT zhangwenchuan prognosticvalueof12m7gmethylationrelatedmirnamarkersandtheircorrelationwithimmuneinfiltrationinbreastcancer
AT zhangshuwan prognosticvalueof12m7gmethylationrelatedmirnamarkersandtheircorrelationwithimmuneinfiltrationinbreastcancer
AT wangzhe prognosticvalueof12m7gmethylationrelatedmirnamarkersandtheircorrelationwithimmuneinfiltrationinbreastcancer