Cargando…
A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs
Cutaneous melanoma (CM) is a skin cancer that is highly metastatic and aggressive, with a dismal prognosis. This is the first study to use inflammatory response-related genes to build a model and evaluate their predictive significance in CM. This study used public databases to download CM patients’...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9389732/ https://www.ncbi.nlm.nih.gov/pubmed/35982458 http://dx.doi.org/10.1186/s12957-022-02726-8 |
_version_ | 1784770521512017920 |
---|---|
author | Xing, Jiahua Li, Yan Chen, Youbai Han, Yan |
author_facet | Xing, Jiahua Li, Yan Chen, Youbai Han, Yan |
author_sort | Xing, Jiahua |
collection | PubMed |
description | Cutaneous melanoma (CM) is a skin cancer that is highly metastatic and aggressive, with a dismal prognosis. This is the first study to use inflammatory response-related genes to build a model and evaluate their predictive significance in CM. This study used public databases to download CM patients’ mRNA expression profiles and clinical data to create multigene prognostic markers in the UCSC cohort. We compared overall survival (OS) between high- and low-risk groups using the Kaplan-Meier curve and determined independent predictors using Cox analysis. We also used enrichment analysis to assess immune cell infiltration fraction and immune pathway-related activity using KEGG enrichment analysis. Furthermore, we detected prognostic genes’ mRNA and protein expression in CM and normal skin tissues using qRT-PCR and immunohistochemistry. Finally, we developed a 5-gene predictive model that showed that patients in the high-risk group had a considerably shorter OS than those in the low-risk group. The analysis of the receiver operating characteristic (ROC) curve proved the model’s predictive ability. We also conducted a drug sensitivity analysis and discovered that the expression levels of prognostic genes were substantially linked with cancer cell sensitivity to antitumor medicines. The findings show that the model we developed, which consists of five inflammatory response-related genes, can be used to forecast the prognosis and immunological state of CM, giving personalized and precision medicine a new goal and direction. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12957-022-02726-8. |
format | Online Article Text |
id | pubmed-9389732 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-93897322022-08-20 A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs Xing, Jiahua Li, Yan Chen, Youbai Han, Yan World J Surg Oncol Research Cutaneous melanoma (CM) is a skin cancer that is highly metastatic and aggressive, with a dismal prognosis. This is the first study to use inflammatory response-related genes to build a model and evaluate their predictive significance in CM. This study used public databases to download CM patients’ mRNA expression profiles and clinical data to create multigene prognostic markers in the UCSC cohort. We compared overall survival (OS) between high- and low-risk groups using the Kaplan-Meier curve and determined independent predictors using Cox analysis. We also used enrichment analysis to assess immune cell infiltration fraction and immune pathway-related activity using KEGG enrichment analysis. Furthermore, we detected prognostic genes’ mRNA and protein expression in CM and normal skin tissues using qRT-PCR and immunohistochemistry. Finally, we developed a 5-gene predictive model that showed that patients in the high-risk group had a considerably shorter OS than those in the low-risk group. The analysis of the receiver operating characteristic (ROC) curve proved the model’s predictive ability. We also conducted a drug sensitivity analysis and discovered that the expression levels of prognostic genes were substantially linked with cancer cell sensitivity to antitumor medicines. The findings show that the model we developed, which consists of five inflammatory response-related genes, can be used to forecast the prognosis and immunological state of CM, giving personalized and precision medicine a new goal and direction. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12957-022-02726-8. BioMed Central 2022-08-19 /pmc/articles/PMC9389732/ /pubmed/35982458 http://dx.doi.org/10.1186/s12957-022-02726-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Xing, Jiahua Li, Yan Chen, Youbai Han, Yan A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title | A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title_full | A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title_fullStr | A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title_full_unstemmed | A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title_short | A novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
title_sort | novel inflammatory response-related signature predicts the prognosis of cutaneous melanoma and the effect of antitumor drugs |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9389732/ https://www.ncbi.nlm.nih.gov/pubmed/35982458 http://dx.doi.org/10.1186/s12957-022-02726-8 |
work_keys_str_mv | AT xingjiahua anovelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT liyan anovelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT chenyoubai anovelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT hanyan anovelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT xingjiahua novelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT liyan novelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT chenyoubai novelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs AT hanyan novelinflammatoryresponserelatedsignaturepredictstheprognosisofcutaneousmelanomaandtheeffectofantitumordrugs |