Cargando…
Predicting the potential for zoonotic transmission and host associations for novel viruses
Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and esti...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390964/ https://www.ncbi.nlm.nih.gov/pubmed/35986178 http://dx.doi.org/10.1038/s42003-022-03797-9 |
_version_ | 1784770765849100288 |
---|---|
author | Pandit, Pranav S. Anthony, Simon J. Goldstein, Tracey Olival, Kevin J. Doyle, Megan M. Gardner, Nicole R. Bird, Brian Smith, Woutrina Wolking, David Gilardi, Kirsten Monagin, Corina Kelly, Terra Uhart, Marcela M. Epstein, Jonathan H. Machalaba, Catherine Rostal, Melinda K. Dawson, Patrick Hagan, Emily Sullivan, Ava Li, Hongying Chmura, Aleksei A. Latinne, Alice Lange, Christian O’Rourke, Tammie Olson, Sarah Keatts, Lucy Mendoza, A. Patricia Perez, Alberto de Paula, Cátia Dejuste Zimmerman, Dawn Valitutto, Marc LeBreton, Matthew McIver, David Islam, Ariful Duong, Veasna Mouiche, Moctar Shi, Zhengli Mulembakani, Prime Kumakamba, Charles Ali, Mohamed Kebede, Nigatu Tamoufe, Ubald Bel-Nono, Samuel Camara, Alpha Pamungkas, Joko Coulibaly, Kalpy J. Abu-Basha, Ehab Kamau, Joseph Silithammavong, Soubanh Desmond, James Hughes, Tom Shiilegdamba, Enkhtuvshin Aung, Ohnmar Karmacharya, Dibesh Nziza, Julius Ndiaye, Daouda Gbakima, Aiah Sajali, Zikankuba Wacharapluesadee, Supaporn Robles, Erika Alandia Ssebide, Benard Suzán, Gerardo Aguirre, Luis F. Solorio, Monica R. Dhole, Tapan N. Nga, Nguyen T. T. Hitchens, Peta L. Joly, Damien O. Saylors, Karen Fine, Amanda Murray, Suzan Karesh, William B. Daszak, Peter Mazet, Jonna A. K. Johnson, Christine K. |
author_facet | Pandit, Pranav S. Anthony, Simon J. Goldstein, Tracey Olival, Kevin J. Doyle, Megan M. Gardner, Nicole R. Bird, Brian Smith, Woutrina Wolking, David Gilardi, Kirsten Monagin, Corina Kelly, Terra Uhart, Marcela M. Epstein, Jonathan H. Machalaba, Catherine Rostal, Melinda K. Dawson, Patrick Hagan, Emily Sullivan, Ava Li, Hongying Chmura, Aleksei A. Latinne, Alice Lange, Christian O’Rourke, Tammie Olson, Sarah Keatts, Lucy Mendoza, A. Patricia Perez, Alberto de Paula, Cátia Dejuste Zimmerman, Dawn Valitutto, Marc LeBreton, Matthew McIver, David Islam, Ariful Duong, Veasna Mouiche, Moctar Shi, Zhengli Mulembakani, Prime Kumakamba, Charles Ali, Mohamed Kebede, Nigatu Tamoufe, Ubald Bel-Nono, Samuel Camara, Alpha Pamungkas, Joko Coulibaly, Kalpy J. Abu-Basha, Ehab Kamau, Joseph Silithammavong, Soubanh Desmond, James Hughes, Tom Shiilegdamba, Enkhtuvshin Aung, Ohnmar Karmacharya, Dibesh Nziza, Julius Ndiaye, Daouda Gbakima, Aiah Sajali, Zikankuba Wacharapluesadee, Supaporn Robles, Erika Alandia Ssebide, Benard Suzán, Gerardo Aguirre, Luis F. Solorio, Monica R. Dhole, Tapan N. Nga, Nguyen T. T. Hitchens, Peta L. Joly, Damien O. Saylors, Karen Fine, Amanda Murray, Suzan Karesh, William B. Daszak, Peter Mazet, Jonna A. K. Johnson, Christine K. |
author_sort | Pandit, Pranav S. |
collection | PubMed |
description | Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and estimate pathways for potential human infection. Using models to predict virus-host networks, we predicted the likelihood of humans as hosts for 513 newly discovered viruses detected by large-scale wildlife surveillance at high-risk animal-human interfaces in Africa, Asia, and Latin America. Predictions indicated that novel coronaviruses are likely to infect a greater number of host species than viruses from other families. Our models further characterize novel viruses through prioritization scores and directly inform surveillance targets to identify host ranges for newly discovered viruses. |
format | Online Article Text |
id | pubmed-9390964 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93909642022-08-21 Predicting the potential for zoonotic transmission and host associations for novel viruses Pandit, Pranav S. Anthony, Simon J. Goldstein, Tracey Olival, Kevin J. Doyle, Megan M. Gardner, Nicole R. Bird, Brian Smith, Woutrina Wolking, David Gilardi, Kirsten Monagin, Corina Kelly, Terra Uhart, Marcela M. Epstein, Jonathan H. Machalaba, Catherine Rostal, Melinda K. Dawson, Patrick Hagan, Emily Sullivan, Ava Li, Hongying Chmura, Aleksei A. Latinne, Alice Lange, Christian O’Rourke, Tammie Olson, Sarah Keatts, Lucy Mendoza, A. Patricia Perez, Alberto de Paula, Cátia Dejuste Zimmerman, Dawn Valitutto, Marc LeBreton, Matthew McIver, David Islam, Ariful Duong, Veasna Mouiche, Moctar Shi, Zhengli Mulembakani, Prime Kumakamba, Charles Ali, Mohamed Kebede, Nigatu Tamoufe, Ubald Bel-Nono, Samuel Camara, Alpha Pamungkas, Joko Coulibaly, Kalpy J. Abu-Basha, Ehab Kamau, Joseph Silithammavong, Soubanh Desmond, James Hughes, Tom Shiilegdamba, Enkhtuvshin Aung, Ohnmar Karmacharya, Dibesh Nziza, Julius Ndiaye, Daouda Gbakima, Aiah Sajali, Zikankuba Wacharapluesadee, Supaporn Robles, Erika Alandia Ssebide, Benard Suzán, Gerardo Aguirre, Luis F. Solorio, Monica R. Dhole, Tapan N. Nga, Nguyen T. T. Hitchens, Peta L. Joly, Damien O. Saylors, Karen Fine, Amanda Murray, Suzan Karesh, William B. Daszak, Peter Mazet, Jonna A. K. Johnson, Christine K. Commun Biol Article Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and estimate pathways for potential human infection. Using models to predict virus-host networks, we predicted the likelihood of humans as hosts for 513 newly discovered viruses detected by large-scale wildlife surveillance at high-risk animal-human interfaces in Africa, Asia, and Latin America. Predictions indicated that novel coronaviruses are likely to infect a greater number of host species than viruses from other families. Our models further characterize novel viruses through prioritization scores and directly inform surveillance targets to identify host ranges for newly discovered viruses. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9390964/ /pubmed/35986178 http://dx.doi.org/10.1038/s42003-022-03797-9 Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Pandit, Pranav S. Anthony, Simon J. Goldstein, Tracey Olival, Kevin J. Doyle, Megan M. Gardner, Nicole R. Bird, Brian Smith, Woutrina Wolking, David Gilardi, Kirsten Monagin, Corina Kelly, Terra Uhart, Marcela M. Epstein, Jonathan H. Machalaba, Catherine Rostal, Melinda K. Dawson, Patrick Hagan, Emily Sullivan, Ava Li, Hongying Chmura, Aleksei A. Latinne, Alice Lange, Christian O’Rourke, Tammie Olson, Sarah Keatts, Lucy Mendoza, A. Patricia Perez, Alberto de Paula, Cátia Dejuste Zimmerman, Dawn Valitutto, Marc LeBreton, Matthew McIver, David Islam, Ariful Duong, Veasna Mouiche, Moctar Shi, Zhengli Mulembakani, Prime Kumakamba, Charles Ali, Mohamed Kebede, Nigatu Tamoufe, Ubald Bel-Nono, Samuel Camara, Alpha Pamungkas, Joko Coulibaly, Kalpy J. Abu-Basha, Ehab Kamau, Joseph Silithammavong, Soubanh Desmond, James Hughes, Tom Shiilegdamba, Enkhtuvshin Aung, Ohnmar Karmacharya, Dibesh Nziza, Julius Ndiaye, Daouda Gbakima, Aiah Sajali, Zikankuba Wacharapluesadee, Supaporn Robles, Erika Alandia Ssebide, Benard Suzán, Gerardo Aguirre, Luis F. Solorio, Monica R. Dhole, Tapan N. Nga, Nguyen T. T. Hitchens, Peta L. Joly, Damien O. Saylors, Karen Fine, Amanda Murray, Suzan Karesh, William B. Daszak, Peter Mazet, Jonna A. K. Johnson, Christine K. Predicting the potential for zoonotic transmission and host associations for novel viruses |
title | Predicting the potential for zoonotic transmission and host associations for novel viruses |
title_full | Predicting the potential for zoonotic transmission and host associations for novel viruses |
title_fullStr | Predicting the potential for zoonotic transmission and host associations for novel viruses |
title_full_unstemmed | Predicting the potential for zoonotic transmission and host associations for novel viruses |
title_short | Predicting the potential for zoonotic transmission and host associations for novel viruses |
title_sort | predicting the potential for zoonotic transmission and host associations for novel viruses |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390964/ https://www.ncbi.nlm.nih.gov/pubmed/35986178 http://dx.doi.org/10.1038/s42003-022-03797-9 |
work_keys_str_mv | AT panditpranavs predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT anthonysimonj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT goldsteintracey predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT olivalkevinj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT doylemeganm predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT gardnernicoler predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT birdbrian predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT smithwoutrina predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT wolkingdavid predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT gilardikirsten predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT monagincorina predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT kellyterra predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT uhartmarcelam predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT epsteinjonathanh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT machalabacatherine predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT rostalmelindak predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT dawsonpatrick predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT haganemily predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT sullivanava predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT lihongying predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT chmuraalekseia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT latinnealice predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT langechristian predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT orourketammie predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT olsonsarah predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT keattslucy predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT mendozaapatricia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT perezalberto predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT depaulacatiadejuste predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT zimmermandawn predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT valituttomarc predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT lebretonmatthew predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT mciverdavid predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT islamariful predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT duongveasna predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT mouichemoctar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT shizhengli predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT mulembakaniprime predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT kumakambacharles predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT alimohamed predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT kebedenigatu predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT tamoufeubald predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT belnonosamuel predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT camaraalpha predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT pamungkasjoko predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT coulibalykalpyj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT abubashaehab predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT kamaujoseph predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT silithammavongsoubanh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT desmondjames predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT hughestom predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT shiilegdambaenkhtuvshin predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT aungohnmar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT karmacharyadibesh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT nzizajulius predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT ndiayedaouda predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT gbakimaaiah predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT sajalizikankuba predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT wacharapluesadeesupaporn predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT robleserikaalandia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT ssebidebenard predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT suzangerardo predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT aguirreluisf predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT soloriomonicar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT dholetapann predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT nganguyentt predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT hitchenspetal predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT jolydamieno predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT saylorskaren predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT fineamanda predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT murraysuzan predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT kareshwilliamb predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT daszakpeter predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT mazetjonnaak predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses AT johnsonchristinek predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses |