Cargando…

Predicting the potential for zoonotic transmission and host associations for novel viruses

Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and esti...

Descripción completa

Detalles Bibliográficos
Autores principales: Pandit, Pranav S., Anthony, Simon J., Goldstein, Tracey, Olival, Kevin J., Doyle, Megan M., Gardner, Nicole R., Bird, Brian, Smith, Woutrina, Wolking, David, Gilardi, Kirsten, Monagin, Corina, Kelly, Terra, Uhart, Marcela M., Epstein, Jonathan H., Machalaba, Catherine, Rostal, Melinda K., Dawson, Patrick, Hagan, Emily, Sullivan, Ava, Li, Hongying, Chmura, Aleksei A., Latinne, Alice, Lange, Christian, O’Rourke, Tammie, Olson, Sarah, Keatts, Lucy, Mendoza, A. Patricia, Perez, Alberto, de Paula, Cátia Dejuste, Zimmerman, Dawn, Valitutto, Marc, LeBreton, Matthew, McIver, David, Islam, Ariful, Duong, Veasna, Mouiche, Moctar, Shi, Zhengli, Mulembakani, Prime, Kumakamba, Charles, Ali, Mohamed, Kebede, Nigatu, Tamoufe, Ubald, Bel-Nono, Samuel, Camara, Alpha, Pamungkas, Joko, Coulibaly, Kalpy J., Abu-Basha, Ehab, Kamau, Joseph, Silithammavong, Soubanh, Desmond, James, Hughes, Tom, Shiilegdamba, Enkhtuvshin, Aung, Ohnmar, Karmacharya, Dibesh, Nziza, Julius, Ndiaye, Daouda, Gbakima, Aiah, Sajali, Zikankuba, Wacharapluesadee, Supaporn, Robles, Erika Alandia, Ssebide, Benard, Suzán, Gerardo, Aguirre, Luis F., Solorio, Monica R., Dhole, Tapan N., Nga, Nguyen T. T., Hitchens, Peta L., Joly, Damien O., Saylors, Karen, Fine, Amanda, Murray, Suzan, Karesh, William B., Daszak, Peter, Mazet, Jonna A. K., Johnson, Christine K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390964/
https://www.ncbi.nlm.nih.gov/pubmed/35986178
http://dx.doi.org/10.1038/s42003-022-03797-9
_version_ 1784770765849100288
author Pandit, Pranav S.
Anthony, Simon J.
Goldstein, Tracey
Olival, Kevin J.
Doyle, Megan M.
Gardner, Nicole R.
Bird, Brian
Smith, Woutrina
Wolking, David
Gilardi, Kirsten
Monagin, Corina
Kelly, Terra
Uhart, Marcela M.
Epstein, Jonathan H.
Machalaba, Catherine
Rostal, Melinda K.
Dawson, Patrick
Hagan, Emily
Sullivan, Ava
Li, Hongying
Chmura, Aleksei A.
Latinne, Alice
Lange, Christian
O’Rourke, Tammie
Olson, Sarah
Keatts, Lucy
Mendoza, A. Patricia
Perez, Alberto
de Paula, Cátia Dejuste
Zimmerman, Dawn
Valitutto, Marc
LeBreton, Matthew
McIver, David
Islam, Ariful
Duong, Veasna
Mouiche, Moctar
Shi, Zhengli
Mulembakani, Prime
Kumakamba, Charles
Ali, Mohamed
Kebede, Nigatu
Tamoufe, Ubald
Bel-Nono, Samuel
Camara, Alpha
Pamungkas, Joko
Coulibaly, Kalpy J.
Abu-Basha, Ehab
Kamau, Joseph
Silithammavong, Soubanh
Desmond, James
Hughes, Tom
Shiilegdamba, Enkhtuvshin
Aung, Ohnmar
Karmacharya, Dibesh
Nziza, Julius
Ndiaye, Daouda
Gbakima, Aiah
Sajali, Zikankuba
Wacharapluesadee, Supaporn
Robles, Erika Alandia
Ssebide, Benard
Suzán, Gerardo
Aguirre, Luis F.
Solorio, Monica R.
Dhole, Tapan N.
Nga, Nguyen T. T.
Hitchens, Peta L.
Joly, Damien O.
Saylors, Karen
Fine, Amanda
Murray, Suzan
Karesh, William B.
Daszak, Peter
Mazet, Jonna A. K.
Johnson, Christine K.
author_facet Pandit, Pranav S.
Anthony, Simon J.
Goldstein, Tracey
Olival, Kevin J.
Doyle, Megan M.
Gardner, Nicole R.
Bird, Brian
Smith, Woutrina
Wolking, David
Gilardi, Kirsten
Monagin, Corina
Kelly, Terra
Uhart, Marcela M.
Epstein, Jonathan H.
Machalaba, Catherine
Rostal, Melinda K.
Dawson, Patrick
Hagan, Emily
Sullivan, Ava
Li, Hongying
Chmura, Aleksei A.
Latinne, Alice
Lange, Christian
O’Rourke, Tammie
Olson, Sarah
Keatts, Lucy
Mendoza, A. Patricia
Perez, Alberto
de Paula, Cátia Dejuste
Zimmerman, Dawn
Valitutto, Marc
LeBreton, Matthew
McIver, David
Islam, Ariful
Duong, Veasna
Mouiche, Moctar
Shi, Zhengli
Mulembakani, Prime
Kumakamba, Charles
Ali, Mohamed
Kebede, Nigatu
Tamoufe, Ubald
Bel-Nono, Samuel
Camara, Alpha
Pamungkas, Joko
Coulibaly, Kalpy J.
Abu-Basha, Ehab
Kamau, Joseph
Silithammavong, Soubanh
Desmond, James
Hughes, Tom
Shiilegdamba, Enkhtuvshin
Aung, Ohnmar
Karmacharya, Dibesh
Nziza, Julius
Ndiaye, Daouda
Gbakima, Aiah
Sajali, Zikankuba
Wacharapluesadee, Supaporn
Robles, Erika Alandia
Ssebide, Benard
Suzán, Gerardo
Aguirre, Luis F.
Solorio, Monica R.
Dhole, Tapan N.
Nga, Nguyen T. T.
Hitchens, Peta L.
Joly, Damien O.
Saylors, Karen
Fine, Amanda
Murray, Suzan
Karesh, William B.
Daszak, Peter
Mazet, Jonna A. K.
Johnson, Christine K.
author_sort Pandit, Pranav S.
collection PubMed
description Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and estimate pathways for potential human infection. Using models to predict virus-host networks, we predicted the likelihood of humans as hosts for 513 newly discovered viruses detected by large-scale wildlife surveillance at high-risk animal-human interfaces in Africa, Asia, and Latin America. Predictions indicated that novel coronaviruses are likely to infect a greater number of host species than viruses from other families. Our models further characterize novel viruses through prioritization scores and directly inform surveillance targets to identify host ranges for newly discovered viruses.
format Online
Article
Text
id pubmed-9390964
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-93909642022-08-21 Predicting the potential for zoonotic transmission and host associations for novel viruses Pandit, Pranav S. Anthony, Simon J. Goldstein, Tracey Olival, Kevin J. Doyle, Megan M. Gardner, Nicole R. Bird, Brian Smith, Woutrina Wolking, David Gilardi, Kirsten Monagin, Corina Kelly, Terra Uhart, Marcela M. Epstein, Jonathan H. Machalaba, Catherine Rostal, Melinda K. Dawson, Patrick Hagan, Emily Sullivan, Ava Li, Hongying Chmura, Aleksei A. Latinne, Alice Lange, Christian O’Rourke, Tammie Olson, Sarah Keatts, Lucy Mendoza, A. Patricia Perez, Alberto de Paula, Cátia Dejuste Zimmerman, Dawn Valitutto, Marc LeBreton, Matthew McIver, David Islam, Ariful Duong, Veasna Mouiche, Moctar Shi, Zhengli Mulembakani, Prime Kumakamba, Charles Ali, Mohamed Kebede, Nigatu Tamoufe, Ubald Bel-Nono, Samuel Camara, Alpha Pamungkas, Joko Coulibaly, Kalpy J. Abu-Basha, Ehab Kamau, Joseph Silithammavong, Soubanh Desmond, James Hughes, Tom Shiilegdamba, Enkhtuvshin Aung, Ohnmar Karmacharya, Dibesh Nziza, Julius Ndiaye, Daouda Gbakima, Aiah Sajali, Zikankuba Wacharapluesadee, Supaporn Robles, Erika Alandia Ssebide, Benard Suzán, Gerardo Aguirre, Luis F. Solorio, Monica R. Dhole, Tapan N. Nga, Nguyen T. T. Hitchens, Peta L. Joly, Damien O. Saylors, Karen Fine, Amanda Murray, Suzan Karesh, William B. Daszak, Peter Mazet, Jonna A. K. Johnson, Christine K. Commun Biol Article Host-virus associations have co-evolved under ecological and evolutionary selection pressures that shape cross-species transmission and spillover to humans. Observed virus-host associations provide relevant context for newly discovered wildlife viruses to assess knowledge gaps in host-range and estimate pathways for potential human infection. Using models to predict virus-host networks, we predicted the likelihood of humans as hosts for 513 newly discovered viruses detected by large-scale wildlife surveillance at high-risk animal-human interfaces in Africa, Asia, and Latin America. Predictions indicated that novel coronaviruses are likely to infect a greater number of host species than viruses from other families. Our models further characterize novel viruses through prioritization scores and directly inform surveillance targets to identify host ranges for newly discovered viruses. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9390964/ /pubmed/35986178 http://dx.doi.org/10.1038/s42003-022-03797-9 Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Pandit, Pranav S.
Anthony, Simon J.
Goldstein, Tracey
Olival, Kevin J.
Doyle, Megan M.
Gardner, Nicole R.
Bird, Brian
Smith, Woutrina
Wolking, David
Gilardi, Kirsten
Monagin, Corina
Kelly, Terra
Uhart, Marcela M.
Epstein, Jonathan H.
Machalaba, Catherine
Rostal, Melinda K.
Dawson, Patrick
Hagan, Emily
Sullivan, Ava
Li, Hongying
Chmura, Aleksei A.
Latinne, Alice
Lange, Christian
O’Rourke, Tammie
Olson, Sarah
Keatts, Lucy
Mendoza, A. Patricia
Perez, Alberto
de Paula, Cátia Dejuste
Zimmerman, Dawn
Valitutto, Marc
LeBreton, Matthew
McIver, David
Islam, Ariful
Duong, Veasna
Mouiche, Moctar
Shi, Zhengli
Mulembakani, Prime
Kumakamba, Charles
Ali, Mohamed
Kebede, Nigatu
Tamoufe, Ubald
Bel-Nono, Samuel
Camara, Alpha
Pamungkas, Joko
Coulibaly, Kalpy J.
Abu-Basha, Ehab
Kamau, Joseph
Silithammavong, Soubanh
Desmond, James
Hughes, Tom
Shiilegdamba, Enkhtuvshin
Aung, Ohnmar
Karmacharya, Dibesh
Nziza, Julius
Ndiaye, Daouda
Gbakima, Aiah
Sajali, Zikankuba
Wacharapluesadee, Supaporn
Robles, Erika Alandia
Ssebide, Benard
Suzán, Gerardo
Aguirre, Luis F.
Solorio, Monica R.
Dhole, Tapan N.
Nga, Nguyen T. T.
Hitchens, Peta L.
Joly, Damien O.
Saylors, Karen
Fine, Amanda
Murray, Suzan
Karesh, William B.
Daszak, Peter
Mazet, Jonna A. K.
Johnson, Christine K.
Predicting the potential for zoonotic transmission and host associations for novel viruses
title Predicting the potential for zoonotic transmission and host associations for novel viruses
title_full Predicting the potential for zoonotic transmission and host associations for novel viruses
title_fullStr Predicting the potential for zoonotic transmission and host associations for novel viruses
title_full_unstemmed Predicting the potential for zoonotic transmission and host associations for novel viruses
title_short Predicting the potential for zoonotic transmission and host associations for novel viruses
title_sort predicting the potential for zoonotic transmission and host associations for novel viruses
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390964/
https://www.ncbi.nlm.nih.gov/pubmed/35986178
http://dx.doi.org/10.1038/s42003-022-03797-9
work_keys_str_mv AT panditpranavs predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT anthonysimonj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT goldsteintracey predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT olivalkevinj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT doylemeganm predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT gardnernicoler predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT birdbrian predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT smithwoutrina predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT wolkingdavid predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT gilardikirsten predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT monagincorina predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT kellyterra predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT uhartmarcelam predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT epsteinjonathanh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT machalabacatherine predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT rostalmelindak predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT dawsonpatrick predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT haganemily predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT sullivanava predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT lihongying predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT chmuraalekseia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT latinnealice predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT langechristian predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT orourketammie predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT olsonsarah predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT keattslucy predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT mendozaapatricia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT perezalberto predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT depaulacatiadejuste predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT zimmermandawn predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT valituttomarc predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT lebretonmatthew predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT mciverdavid predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT islamariful predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT duongveasna predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT mouichemoctar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT shizhengli predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT mulembakaniprime predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT kumakambacharles predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT alimohamed predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT kebedenigatu predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT tamoufeubald predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT belnonosamuel predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT camaraalpha predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT pamungkasjoko predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT coulibalykalpyj predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT abubashaehab predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT kamaujoseph predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT silithammavongsoubanh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT desmondjames predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT hughestom predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT shiilegdambaenkhtuvshin predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT aungohnmar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT karmacharyadibesh predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT nzizajulius predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT ndiayedaouda predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT gbakimaaiah predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT sajalizikankuba predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT wacharapluesadeesupaporn predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT robleserikaalandia predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT ssebidebenard predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT suzangerardo predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT aguirreluisf predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT soloriomonicar predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT dholetapann predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT nganguyentt predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT hitchenspetal predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT jolydamieno predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT saylorskaren predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT fineamanda predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT murraysuzan predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT kareshwilliamb predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT daszakpeter predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT mazetjonnaak predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses
AT johnsonchristinek predictingthepotentialforzoonotictransmissionandhostassociationsfornovelviruses