MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis

The development of the Brain Imaging Data Structure (BIDS; Gorgolewski et al., 2016) gave the neuroscientific community a standard to organize and share data. BIDS prescribes file naming conventions and a folder structure to store data in a set of already existing file formats. Next to rules about o...

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Autores principales: Appelhoff, Stefan, Sanderson, Matthew, Brooks, Teon L, van Vliet, Marijn, Quentin, Romain, Holdgraf, Chris, Chaumon, Maximilien, Mikulan, Ezequiel, Tavabi, Kambiz, Höchenberger, Richard, Welke, Dominik, Brunner, Clemens, Rockhill, Alexander P, Larson, Eric, Gramfort, Alexandre, Jas, Mainak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2019
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390980/
https://www.ncbi.nlm.nih.gov/pubmed/35990374
http://dx.doi.org/10.21105/joss.01896
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author Appelhoff, Stefan
Sanderson, Matthew
Brooks, Teon L
van Vliet, Marijn
Quentin, Romain
Holdgraf, Chris
Chaumon, Maximilien
Mikulan, Ezequiel
Tavabi, Kambiz
Höchenberger, Richard
Welke, Dominik
Brunner, Clemens
Rockhill, Alexander P
Larson, Eric
Gramfort, Alexandre
Jas, Mainak
author_facet Appelhoff, Stefan
Sanderson, Matthew
Brooks, Teon L
van Vliet, Marijn
Quentin, Romain
Holdgraf, Chris
Chaumon, Maximilien
Mikulan, Ezequiel
Tavabi, Kambiz
Höchenberger, Richard
Welke, Dominik
Brunner, Clemens
Rockhill, Alexander P
Larson, Eric
Gramfort, Alexandre
Jas, Mainak
author_sort Appelhoff, Stefan
collection PubMed
description The development of the Brain Imaging Data Structure (BIDS; Gorgolewski et al., 2016) gave the neuroscientific community a standard to organize and share data. BIDS prescribes file naming conventions and a folder structure to store data in a set of already existing file formats. Next to rules about organization of the data itself, BIDS provides standardized templates to store associated metadata in the form of Javascript Object Notation (JSON) and tab separated value (TSV) files. It thus facilitates data sharing, eases metadata querying, and enables automatic data analysis pipelines. BIDS is a rich system to curate, aggregate, and annotate neuroimaging databases.
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spelling pubmed-93909802022-08-19 MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis Appelhoff, Stefan Sanderson, Matthew Brooks, Teon L van Vliet, Marijn Quentin, Romain Holdgraf, Chris Chaumon, Maximilien Mikulan, Ezequiel Tavabi, Kambiz Höchenberger, Richard Welke, Dominik Brunner, Clemens Rockhill, Alexander P Larson, Eric Gramfort, Alexandre Jas, Mainak J Open Source Softw Article The development of the Brain Imaging Data Structure (BIDS; Gorgolewski et al., 2016) gave the neuroscientific community a standard to organize and share data. BIDS prescribes file naming conventions and a folder structure to store data in a set of already existing file formats. Next to rules about organization of the data itself, BIDS provides standardized templates to store associated metadata in the form of Javascript Object Notation (JSON) and tab separated value (TSV) files. It thus facilitates data sharing, eases metadata querying, and enables automatic data analysis pipelines. BIDS is a rich system to curate, aggregate, and annotate neuroimaging databases. 2019 2019-12-18 /pmc/articles/PMC9390980/ /pubmed/35990374 http://dx.doi.org/10.21105/joss.01896 Text en https://creativecommons.org/licenses/by/4.0/Authors of papers retain copyright and release the work under a Creative Commons Attribution 4.0 International License (CC-BY).
spellingShingle Article
Appelhoff, Stefan
Sanderson, Matthew
Brooks, Teon L
van Vliet, Marijn
Quentin, Romain
Holdgraf, Chris
Chaumon, Maximilien
Mikulan, Ezequiel
Tavabi, Kambiz
Höchenberger, Richard
Welke, Dominik
Brunner, Clemens
Rockhill, Alexander P
Larson, Eric
Gramfort, Alexandre
Jas, Mainak
MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title_full MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title_fullStr MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title_full_unstemmed MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title_short MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
title_sort mne-bids: organizing electrophysiological data into the bids format and facilitating their analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9390980/
https://www.ncbi.nlm.nih.gov/pubmed/35990374
http://dx.doi.org/10.21105/joss.01896
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