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EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients
BACKGROUND: Uveal melanoma (UVM) is the most common primary intraocular malignancy in adults. Epithelial-mesenchymal transition (EMT) is an essential regulator of the UVM's immune microenvironment. However, the precise role of EMT in UVM remains to be explored and the development of a related t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391141/ https://www.ncbi.nlm.nih.gov/pubmed/35990996 http://dx.doi.org/10.1155/2022/5436988 |
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author | Lv, Yufei He, Lixian Jin, Mengyi Sun, Wenxin Tan, Gang Liu, Zuguo |
author_facet | Lv, Yufei He, Lixian Jin, Mengyi Sun, Wenxin Tan, Gang Liu, Zuguo |
author_sort | Lv, Yufei |
collection | PubMed |
description | BACKGROUND: Uveal melanoma (UVM) is the most common primary intraocular malignancy in adults. Epithelial-mesenchymal transition (EMT) is an essential regulator of the UVM's immune microenvironment. However, the precise role of EMT in UVM remains to be explored and the development of a related treatment strategy is urgently needed. METHODS: Multiomics data and clinical information for TCGA-UVM were used to identify the EMT subtypes and analyze their regulatory role in the immune microenvironment in UVM. A machine-learning method based on the identified subtypes was utilized to construct the EMT feature-based prognostic model. External validation cohorts GSE84976 and GSE22138 were employed to validate the model's robustness. Immunotherapy cohort IMvigor210 was used to explore the model's potential to predict immunotherapy responsiveness. RESULTS: Two EMT subtypes were identified in UVM. The role of EMT in shaping the immune microenvironment and regulating cancer-immunity circle of UVM was analyzed. A robust prognostic model was presented and validated to predict patient prognosis. The model also predicted patient's immune features and immunotherapy responsiveness. CONCLUSION: The EMT-mediated immune features in UVM were illustrated, providing a reliable model to facilitate precise UVM treatment. This research may assist in decision-making during clinical UVM therapy. |
format | Online Article Text |
id | pubmed-9391141 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-93911412022-08-20 EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients Lv, Yufei He, Lixian Jin, Mengyi Sun, Wenxin Tan, Gang Liu, Zuguo J Oncol Research Article BACKGROUND: Uveal melanoma (UVM) is the most common primary intraocular malignancy in adults. Epithelial-mesenchymal transition (EMT) is an essential regulator of the UVM's immune microenvironment. However, the precise role of EMT in UVM remains to be explored and the development of a related treatment strategy is urgently needed. METHODS: Multiomics data and clinical information for TCGA-UVM were used to identify the EMT subtypes and analyze their regulatory role in the immune microenvironment in UVM. A machine-learning method based on the identified subtypes was utilized to construct the EMT feature-based prognostic model. External validation cohorts GSE84976 and GSE22138 were employed to validate the model's robustness. Immunotherapy cohort IMvigor210 was used to explore the model's potential to predict immunotherapy responsiveness. RESULTS: Two EMT subtypes were identified in UVM. The role of EMT in shaping the immune microenvironment and regulating cancer-immunity circle of UVM was analyzed. A robust prognostic model was presented and validated to predict patient prognosis. The model also predicted patient's immune features and immunotherapy responsiveness. CONCLUSION: The EMT-mediated immune features in UVM were illustrated, providing a reliable model to facilitate precise UVM treatment. This research may assist in decision-making during clinical UVM therapy. Hindawi 2022-08-12 /pmc/articles/PMC9391141/ /pubmed/35990996 http://dx.doi.org/10.1155/2022/5436988 Text en Copyright © 2022 Yufei Lv et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Lv, Yufei He, Lixian Jin, Mengyi Sun, Wenxin Tan, Gang Liu, Zuguo EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title | EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title_full | EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title_fullStr | EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title_full_unstemmed | EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title_short | EMT-Related Gene Signature Predicts the Prognosis in Uveal Melanoma Patients |
title_sort | emt-related gene signature predicts the prognosis in uveal melanoma patients |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391141/ https://www.ncbi.nlm.nih.gov/pubmed/35990996 http://dx.doi.org/10.1155/2022/5436988 |
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