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Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations

Individual organizations, such as hospitals, pharmaceutical companies, and health insurance providers, are currently limited in their ability to collect data that are fully representative of a disease population. This can, in turn, negatively impact the generalization ability of statistical models a...

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Autores principales: Wendland, Philipp, Birkenbihl, Colin, Gomez-Freixa, Marc, Sood, Meemansa, Kschischo, Maik, Fröhlich, Holger
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391444/
https://www.ncbi.nlm.nih.gov/pubmed/35986075
http://dx.doi.org/10.1038/s41746-022-00666-x
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author Wendland, Philipp
Birkenbihl, Colin
Gomez-Freixa, Marc
Sood, Meemansa
Kschischo, Maik
Fröhlich, Holger
author_facet Wendland, Philipp
Birkenbihl, Colin
Gomez-Freixa, Marc
Sood, Meemansa
Kschischo, Maik
Fröhlich, Holger
author_sort Wendland, Philipp
collection PubMed
description Individual organizations, such as hospitals, pharmaceutical companies, and health insurance providers, are currently limited in their ability to collect data that are fully representative of a disease population. This can, in turn, negatively impact the generalization ability of statistical models and scientific insights. However, sharing data across different organizations is highly restricted by legal regulations. While federated data access concepts exist, they are technically and organizationally difficult to realize. An alternative approach would be to exchange synthetic patient data instead. In this work, we introduce the Multimodal Neural Ordinary Differential Equations (MultiNODEs), a hybrid, multimodal AI approach, which allows for generating highly realistic synthetic patient trajectories on a continuous time scale, hence enabling smooth interpolation and extrapolation of clinical studies. Our proposed method can integrate both static and longitudinal data, and implicitly handles missing values. We demonstrate the capabilities of MultiNODEs by applying them to real patient-level data from two independent clinical studies and simulated epidemiological data of an infectious disease.
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spelling pubmed-93914442022-08-21 Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations Wendland, Philipp Birkenbihl, Colin Gomez-Freixa, Marc Sood, Meemansa Kschischo, Maik Fröhlich, Holger NPJ Digit Med Article Individual organizations, such as hospitals, pharmaceutical companies, and health insurance providers, are currently limited in their ability to collect data that are fully representative of a disease population. This can, in turn, negatively impact the generalization ability of statistical models and scientific insights. However, sharing data across different organizations is highly restricted by legal regulations. While federated data access concepts exist, they are technically and organizationally difficult to realize. An alternative approach would be to exchange synthetic patient data instead. In this work, we introduce the Multimodal Neural Ordinary Differential Equations (MultiNODEs), a hybrid, multimodal AI approach, which allows for generating highly realistic synthetic patient trajectories on a continuous time scale, hence enabling smooth interpolation and extrapolation of clinical studies. Our proposed method can integrate both static and longitudinal data, and implicitly handles missing values. We demonstrate the capabilities of MultiNODEs by applying them to real patient-level data from two independent clinical studies and simulated epidemiological data of an infectious disease. Nature Publishing Group UK 2022-08-20 /pmc/articles/PMC9391444/ /pubmed/35986075 http://dx.doi.org/10.1038/s41746-022-00666-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wendland, Philipp
Birkenbihl, Colin
Gomez-Freixa, Marc
Sood, Meemansa
Kschischo, Maik
Fröhlich, Holger
Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title_full Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title_fullStr Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title_full_unstemmed Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title_short Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations
title_sort generation of realistic synthetic data using multimodal neural ordinary differential equations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391444/
https://www.ncbi.nlm.nih.gov/pubmed/35986075
http://dx.doi.org/10.1038/s41746-022-00666-x
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