Cargando…

Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset

In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep featur...

Descripción completa

Detalles Bibliográficos
Autores principales: Braghetto, Anna, Marturano, Francesca, Paiusco, Marta, Baiesi, Marco, Bettinelli, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391464/
https://www.ncbi.nlm.nih.gov/pubmed/35986072
http://dx.doi.org/10.1038/s41598-022-18085-z
_version_ 1784770859441848320
author Braghetto, Anna
Marturano, Francesca
Paiusco, Marta
Baiesi, Marco
Bettinelli, Andrea
author_facet Braghetto, Anna
Marturano, Francesca
Paiusco, Marta
Baiesi, Marco
Bettinelli, Andrea
author_sort Braghetto, Anna
collection PubMed
description In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep features were extracted from bi-dimensional tumor slices by convolutional autoencoder. Both radiomic and deep features were fed to 24 different pipelines formed by the combination of four feature selection/reduction methods and six classifiers. Direct classification through convolutional neural networks (CNNs) was also performed. Each approach was investigated with and without the inclusion of clinical parameters. The maximum area under the receiver operating characteristic on the test set improved from 0.59, obtained for the baseline clinical model, to 0.67 ± 0.03, 0.63 ± 0.03 and 0.67 ± 0.02 for models based on radiomic features, deep features, and their combination, and to 0.64 ± 0.04 for direct CNN classification. Despite the high number of pipelines and approaches tested, results were comparable and in line with previous works, hence confirming that it is challenging to extract further imaging-based information from the LUNG1 dataset for the prediction of 2-year OS.
format Online
Article
Text
id pubmed-9391464
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-93914642022-08-21 Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset Braghetto, Anna Marturano, Francesca Paiusco, Marta Baiesi, Marco Bettinelli, Andrea Sci Rep Article In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep features were extracted from bi-dimensional tumor slices by convolutional autoencoder. Both radiomic and deep features were fed to 24 different pipelines formed by the combination of four feature selection/reduction methods and six classifiers. Direct classification through convolutional neural networks (CNNs) was also performed. Each approach was investigated with and without the inclusion of clinical parameters. The maximum area under the receiver operating characteristic on the test set improved from 0.59, obtained for the baseline clinical model, to 0.67 ± 0.03, 0.63 ± 0.03 and 0.67 ± 0.02 for models based on radiomic features, deep features, and their combination, and to 0.64 ± 0.04 for direct CNN classification. Despite the high number of pipelines and approaches tested, results were comparable and in line with previous works, hence confirming that it is challenging to extract further imaging-based information from the LUNG1 dataset for the prediction of 2-year OS. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9391464/ /pubmed/35986072 http://dx.doi.org/10.1038/s41598-022-18085-z Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Braghetto, Anna
Marturano, Francesca
Paiusco, Marta
Baiesi, Marco
Bettinelli, Andrea
Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title_full Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title_fullStr Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title_full_unstemmed Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title_short Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
title_sort radiomics and deep learning methods for the prediction of 2-year overall survival in lung1 dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391464/
https://www.ncbi.nlm.nih.gov/pubmed/35986072
http://dx.doi.org/10.1038/s41598-022-18085-z
work_keys_str_mv AT braghettoanna radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset
AT marturanofrancesca radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset
AT paiuscomarta radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset
AT baiesimarco radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset
AT bettinelliandrea radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset