Cargando…
Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset
In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep featur...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391464/ https://www.ncbi.nlm.nih.gov/pubmed/35986072 http://dx.doi.org/10.1038/s41598-022-18085-z |
_version_ | 1784770859441848320 |
---|---|
author | Braghetto, Anna Marturano, Francesca Paiusco, Marta Baiesi, Marco Bettinelli, Andrea |
author_facet | Braghetto, Anna Marturano, Francesca Paiusco, Marta Baiesi, Marco Bettinelli, Andrea |
author_sort | Braghetto, Anna |
collection | PubMed |
description | In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep features were extracted from bi-dimensional tumor slices by convolutional autoencoder. Both radiomic and deep features were fed to 24 different pipelines formed by the combination of four feature selection/reduction methods and six classifiers. Direct classification through convolutional neural networks (CNNs) was also performed. Each approach was investigated with and without the inclusion of clinical parameters. The maximum area under the receiver operating characteristic on the test set improved from 0.59, obtained for the baseline clinical model, to 0.67 ± 0.03, 0.63 ± 0.03 and 0.67 ± 0.02 for models based on radiomic features, deep features, and their combination, and to 0.64 ± 0.04 for direct CNN classification. Despite the high number of pipelines and approaches tested, results were comparable and in line with previous works, hence confirming that it is challenging to extract further imaging-based information from the LUNG1 dataset for the prediction of 2-year OS. |
format | Online Article Text |
id | pubmed-9391464 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93914642022-08-21 Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset Braghetto, Anna Marturano, Francesca Paiusco, Marta Baiesi, Marco Bettinelli, Andrea Sci Rep Article In this study, we tested and compared radiomics and deep learning-based approaches on the public LUNG1 dataset, for the prediction of 2-year overall survival (OS) in non-small cell lung cancer patients. Radiomic features were extracted from the gross tumor volume using Pyradiomics, while deep features were extracted from bi-dimensional tumor slices by convolutional autoencoder. Both radiomic and deep features were fed to 24 different pipelines formed by the combination of four feature selection/reduction methods and six classifiers. Direct classification through convolutional neural networks (CNNs) was also performed. Each approach was investigated with and without the inclusion of clinical parameters. The maximum area under the receiver operating characteristic on the test set improved from 0.59, obtained for the baseline clinical model, to 0.67 ± 0.03, 0.63 ± 0.03 and 0.67 ± 0.02 for models based on radiomic features, deep features, and their combination, and to 0.64 ± 0.04 for direct CNN classification. Despite the high number of pipelines and approaches tested, results were comparable and in line with previous works, hence confirming that it is challenging to extract further imaging-based information from the LUNG1 dataset for the prediction of 2-year OS. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9391464/ /pubmed/35986072 http://dx.doi.org/10.1038/s41598-022-18085-z Text en © The Author(s) 2022, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Braghetto, Anna Marturano, Francesca Paiusco, Marta Baiesi, Marco Bettinelli, Andrea Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title | Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title_full | Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title_fullStr | Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title_full_unstemmed | Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title_short | Radiomics and deep learning methods for the prediction of 2-year overall survival in LUNG1 dataset |
title_sort | radiomics and deep learning methods for the prediction of 2-year overall survival in lung1 dataset |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391464/ https://www.ncbi.nlm.nih.gov/pubmed/35986072 http://dx.doi.org/10.1038/s41598-022-18085-z |
work_keys_str_mv | AT braghettoanna radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset AT marturanofrancesca radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset AT paiuscomarta radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset AT baiesimarco radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset AT bettinelliandrea radiomicsanddeeplearningmethodsforthepredictionof2yearoverallsurvivalinlung1dataset |