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A lightweight neural network with multiscale feature enhancement for liver CT segmentation
Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convol...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391485/ https://www.ncbi.nlm.nih.gov/pubmed/35986015 http://dx.doi.org/10.1038/s41598-022-16828-6 |
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author | Ansari, Mohammed Yusuf Yang, Yin Balakrishnan, Shidin Abinahed, Julien Al-Ansari, Abdulla Warfa, Mohamed Almokdad, Omran Barah, Ali Omer, Ahmed Singh, Ajay Vikram Meher, Pramod Kumar Bhadra, Jolly Halabi, Osama Azampour, Mohammad Farid Navab, Nassir Wendler, Thomas Dakua, Sarada Prasad |
author_facet | Ansari, Mohammed Yusuf Yang, Yin Balakrishnan, Shidin Abinahed, Julien Al-Ansari, Abdulla Warfa, Mohamed Almokdad, Omran Barah, Ali Omer, Ahmed Singh, Ajay Vikram Meher, Pramod Kumar Bhadra, Jolly Halabi, Osama Azampour, Mohammad Farid Navab, Nassir Wendler, Thomas Dakua, Sarada Prasad |
author_sort | Ansari, Mohammed Yusuf |
collection | PubMed |
description | Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convolutions, providing a low disk utilization method for precise liver CT segmentation. The proposed network is trained on medical segmentation decathlon dataset using a modified surface loss function. Additionally, we evaluate its quantitative and qualitative performance; the Res16-PAC-UNet achieves a Dice coefficient of 0.950 ± 0.019 with less than half a million parameters. Alternatively, the Res32-PAC-UNet obtains a Dice coefficient of 0.958 ± 0.015 with an acceptable parameter count of approximately 1.2 million. |
format | Online Article Text |
id | pubmed-9391485 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93914852022-08-21 A lightweight neural network with multiscale feature enhancement for liver CT segmentation Ansari, Mohammed Yusuf Yang, Yin Balakrishnan, Shidin Abinahed, Julien Al-Ansari, Abdulla Warfa, Mohamed Almokdad, Omran Barah, Ali Omer, Ahmed Singh, Ajay Vikram Meher, Pramod Kumar Bhadra, Jolly Halabi, Osama Azampour, Mohammad Farid Navab, Nassir Wendler, Thomas Dakua, Sarada Prasad Sci Rep Article Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convolutions, providing a low disk utilization method for precise liver CT segmentation. The proposed network is trained on medical segmentation decathlon dataset using a modified surface loss function. Additionally, we evaluate its quantitative and qualitative performance; the Res16-PAC-UNet achieves a Dice coefficient of 0.950 ± 0.019 with less than half a million parameters. Alternatively, the Res32-PAC-UNet obtains a Dice coefficient of 0.958 ± 0.015 with an acceptable parameter count of approximately 1.2 million. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9391485/ /pubmed/35986015 http://dx.doi.org/10.1038/s41598-022-16828-6 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Ansari, Mohammed Yusuf Yang, Yin Balakrishnan, Shidin Abinahed, Julien Al-Ansari, Abdulla Warfa, Mohamed Almokdad, Omran Barah, Ali Omer, Ahmed Singh, Ajay Vikram Meher, Pramod Kumar Bhadra, Jolly Halabi, Osama Azampour, Mohammad Farid Navab, Nassir Wendler, Thomas Dakua, Sarada Prasad A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title | A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title_full | A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title_fullStr | A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title_full_unstemmed | A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title_short | A lightweight neural network with multiscale feature enhancement for liver CT segmentation |
title_sort | lightweight neural network with multiscale feature enhancement for liver ct segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391485/ https://www.ncbi.nlm.nih.gov/pubmed/35986015 http://dx.doi.org/10.1038/s41598-022-16828-6 |
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