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A lightweight neural network with multiscale feature enhancement for liver CT segmentation

Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convol...

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Autores principales: Ansari, Mohammed Yusuf, Yang, Yin, Balakrishnan, Shidin, Abinahed, Julien, Al-Ansari, Abdulla, Warfa, Mohamed, Almokdad, Omran, Barah, Ali, Omer, Ahmed, Singh, Ajay Vikram, Meher, Pramod Kumar, Bhadra, Jolly, Halabi, Osama, Azampour, Mohammad Farid, Navab, Nassir, Wendler, Thomas, Dakua, Sarada Prasad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391485/
https://www.ncbi.nlm.nih.gov/pubmed/35986015
http://dx.doi.org/10.1038/s41598-022-16828-6
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author Ansari, Mohammed Yusuf
Yang, Yin
Balakrishnan, Shidin
Abinahed, Julien
Al-Ansari, Abdulla
Warfa, Mohamed
Almokdad, Omran
Barah, Ali
Omer, Ahmed
Singh, Ajay Vikram
Meher, Pramod Kumar
Bhadra, Jolly
Halabi, Osama
Azampour, Mohammad Farid
Navab, Nassir
Wendler, Thomas
Dakua, Sarada Prasad
author_facet Ansari, Mohammed Yusuf
Yang, Yin
Balakrishnan, Shidin
Abinahed, Julien
Al-Ansari, Abdulla
Warfa, Mohamed
Almokdad, Omran
Barah, Ali
Omer, Ahmed
Singh, Ajay Vikram
Meher, Pramod Kumar
Bhadra, Jolly
Halabi, Osama
Azampour, Mohammad Farid
Navab, Nassir
Wendler, Thomas
Dakua, Sarada Prasad
author_sort Ansari, Mohammed Yusuf
collection PubMed
description Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convolutions, providing a low disk utilization method for precise liver CT segmentation. The proposed network is trained on medical segmentation decathlon dataset using a modified surface loss function. Additionally, we evaluate its quantitative and qualitative performance; the Res16-PAC-UNet achieves a Dice coefficient of 0.950 ± 0.019 with less than half a million parameters. Alternatively, the Res32-PAC-UNet obtains a Dice coefficient of 0.958 ± 0.015 with an acceptable parameter count of approximately 1.2 million.
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spelling pubmed-93914852022-08-21 A lightweight neural network with multiscale feature enhancement for liver CT segmentation Ansari, Mohammed Yusuf Yang, Yin Balakrishnan, Shidin Abinahed, Julien Al-Ansari, Abdulla Warfa, Mohamed Almokdad, Omran Barah, Ali Omer, Ahmed Singh, Ajay Vikram Meher, Pramod Kumar Bhadra, Jolly Halabi, Osama Azampour, Mohammad Farid Navab, Nassir Wendler, Thomas Dakua, Sarada Prasad Sci Rep Article Segmentation of abdominal Computed Tomography (CT) scan is essential for analyzing, diagnosing, and treating visceral organ diseases (e.g., hepatocellular carcinoma). This paper proposes a novel neural network (Res-PAC-UNet) that employs a fixed-width residual UNet backbone and Pyramid Atrous Convolutions, providing a low disk utilization method for precise liver CT segmentation. The proposed network is trained on medical segmentation decathlon dataset using a modified surface loss function. Additionally, we evaluate its quantitative and qualitative performance; the Res16-PAC-UNet achieves a Dice coefficient of 0.950 ± 0.019 with less than half a million parameters. Alternatively, the Res32-PAC-UNet obtains a Dice coefficient of 0.958 ± 0.015 with an acceptable parameter count of approximately 1.2 million. Nature Publishing Group UK 2022-08-19 /pmc/articles/PMC9391485/ /pubmed/35986015 http://dx.doi.org/10.1038/s41598-022-16828-6 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ansari, Mohammed Yusuf
Yang, Yin
Balakrishnan, Shidin
Abinahed, Julien
Al-Ansari, Abdulla
Warfa, Mohamed
Almokdad, Omran
Barah, Ali
Omer, Ahmed
Singh, Ajay Vikram
Meher, Pramod Kumar
Bhadra, Jolly
Halabi, Osama
Azampour, Mohammad Farid
Navab, Nassir
Wendler, Thomas
Dakua, Sarada Prasad
A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title_full A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title_fullStr A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title_full_unstemmed A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title_short A lightweight neural network with multiscale feature enhancement for liver CT segmentation
title_sort lightweight neural network with multiscale feature enhancement for liver ct segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9391485/
https://www.ncbi.nlm.nih.gov/pubmed/35986015
http://dx.doi.org/10.1038/s41598-022-16828-6
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