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Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification

Glyphosate is one of the most widely used non-selective herbicides, and the creation of glyphosate-resistant cultivars solves the problem of limited spraying area. Therefore, it is of great significance to quickly identify resistant cultivars without destruction during the development of superior cu...

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Autores principales: Tao, Mingzhu, He, Yong, Bai, Xiulin, Chen, Xiaoyun, Wei, Yuzhen, Peng, Cheng, Feng, Xuping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9393615/
https://www.ncbi.nlm.nih.gov/pubmed/36003818
http://dx.doi.org/10.3389/fpls.2022.973745
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author Tao, Mingzhu
He, Yong
Bai, Xiulin
Chen, Xiaoyun
Wei, Yuzhen
Peng, Cheng
Feng, Xuping
author_facet Tao, Mingzhu
He, Yong
Bai, Xiulin
Chen, Xiaoyun
Wei, Yuzhen
Peng, Cheng
Feng, Xuping
author_sort Tao, Mingzhu
collection PubMed
description Glyphosate is one of the most widely used non-selective herbicides, and the creation of glyphosate-resistant cultivars solves the problem of limited spraying area. Therefore, it is of great significance to quickly identify resistant cultivars without destruction during the development of superior cultivars. This work took maize seedlings as the experimental object, and the spectral indices of leaves were calculated to construct a model with good robustness that could be used in different experiments. Compared with no transfer strategies, transferability of support vector machine learning model was improved by randomly selecting 14% of source domain from target domain to train and applying transfer component analysis algorithm, the accuracy on target domain reached 83% (increased by 71%), recall increased from 10 to 100%, and F1-score increased from 0.17 to 0.86. The overall results showed that both transfer component analysis algorithm and updating source domain could improve the transferability of model among experiments, and these two transfer strategies could complement each other’s advantages to achieve the best classification performance. Therefore, this work is beneficial to timely understanding of the physiological status of plants, identifying glyphosate resistant cultivars, and ultimately provides theoretical basis and technical support for new cultivar creation and high-throughput selection.
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spelling pubmed-93936152022-08-23 Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification Tao, Mingzhu He, Yong Bai, Xiulin Chen, Xiaoyun Wei, Yuzhen Peng, Cheng Feng, Xuping Front Plant Sci Plant Science Glyphosate is one of the most widely used non-selective herbicides, and the creation of glyphosate-resistant cultivars solves the problem of limited spraying area. Therefore, it is of great significance to quickly identify resistant cultivars without destruction during the development of superior cultivars. This work took maize seedlings as the experimental object, and the spectral indices of leaves were calculated to construct a model with good robustness that could be used in different experiments. Compared with no transfer strategies, transferability of support vector machine learning model was improved by randomly selecting 14% of source domain from target domain to train and applying transfer component analysis algorithm, the accuracy on target domain reached 83% (increased by 71%), recall increased from 10 to 100%, and F1-score increased from 0.17 to 0.86. The overall results showed that both transfer component analysis algorithm and updating source domain could improve the transferability of model among experiments, and these two transfer strategies could complement each other’s advantages to achieve the best classification performance. Therefore, this work is beneficial to timely understanding of the physiological status of plants, identifying glyphosate resistant cultivars, and ultimately provides theoretical basis and technical support for new cultivar creation and high-throughput selection. Frontiers Media S.A. 2022-08-08 /pmc/articles/PMC9393615/ /pubmed/36003818 http://dx.doi.org/10.3389/fpls.2022.973745 Text en Copyright © 2022 Tao, He, Bai, Chen, Wei, Peng and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Tao, Mingzhu
He, Yong
Bai, Xiulin
Chen, Xiaoyun
Wei, Yuzhen
Peng, Cheng
Feng, Xuping
Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title_full Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title_fullStr Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title_full_unstemmed Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title_short Combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
title_sort combination of spectral index and transfer learning strategy for glyphosate-resistant cultivar identification
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9393615/
https://www.ncbi.nlm.nih.gov/pubmed/36003818
http://dx.doi.org/10.3389/fpls.2022.973745
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