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Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches

One of the common types of cancer for women is ovarian cancer. Still, at present, there are no drug therapies that can properly cure this deadly disease. However, early-stage detection could boost the life expectancy of the patients. The main aim of this work is to apply machine learning models alon...

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Autores principales: Ahamad, Md. Martuza, Aktar, Sakifa, Uddin, Md. Jamal, Rahman, Tasnia, Alyami, Salem A., Al-Ashhab, Samer, Akhdar, Hanan Fawaz, Azad, AKM, Moni, Mohammad Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9394434/
https://www.ncbi.nlm.nih.gov/pubmed/35893305
http://dx.doi.org/10.3390/jpm12081211
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author Ahamad, Md. Martuza
Aktar, Sakifa
Uddin, Md. Jamal
Rahman, Tasnia
Alyami, Salem A.
Al-Ashhab, Samer
Akhdar, Hanan Fawaz
Azad, AKM
Moni, Mohammad Ali
author_facet Ahamad, Md. Martuza
Aktar, Sakifa
Uddin, Md. Jamal
Rahman, Tasnia
Alyami, Salem A.
Al-Ashhab, Samer
Akhdar, Hanan Fawaz
Azad, AKM
Moni, Mohammad Ali
author_sort Ahamad, Md. Martuza
collection PubMed
description One of the common types of cancer for women is ovarian cancer. Still, at present, there are no drug therapies that can properly cure this deadly disease. However, early-stage detection could boost the life expectancy of the patients. The main aim of this work is to apply machine learning models along with statistical methods to the clinical data obtained from 349 patient individuals to conduct predictive analytics for early diagnosis. In statistical analysis, Student’s t-test as well as log fold changes of two groups are used to find the significant blood biomarkers. Furthermore, a set of machine learning models including Random Forest (RF), Support Vector Machine (SVM), Decision Tree (DT), Extreme Gradient Boosting Machine (XGBoost), Logistic Regression (LR), Gradient Boosting Machine (GBM) and Light Gradient Boosting Machine (LGBM) are used to build classification models to stratify benign-vs.-malignant ovarian cancer patients. Both of the analysis techniques recognized that the serumsamples carbohydrate antigen 125, carbohydrate antigen 19-9, carcinoembryonic antigen and human epididymis protein 4 are the top-most significant biomarkers as well as neutrophil ratio, thrombocytocrit, hematocrit blood samples, alanine aminotransferase, calcium, indirect bilirubin, uric acid, natriumas as general chemistry tests. Moreover, the results from predictive analysis suggest that the machine learning models can classify malignant patients from benign patients with accuracy as good as 91%. Since generally, early-stage detection is not available, machine learning detection could play a significant role in cancer diagnosis.
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spelling pubmed-93944342022-08-23 Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches Ahamad, Md. Martuza Aktar, Sakifa Uddin, Md. Jamal Rahman, Tasnia Alyami, Salem A. Al-Ashhab, Samer Akhdar, Hanan Fawaz Azad, AKM Moni, Mohammad Ali J Pers Med Article One of the common types of cancer for women is ovarian cancer. Still, at present, there are no drug therapies that can properly cure this deadly disease. However, early-stage detection could boost the life expectancy of the patients. The main aim of this work is to apply machine learning models along with statistical methods to the clinical data obtained from 349 patient individuals to conduct predictive analytics for early diagnosis. In statistical analysis, Student’s t-test as well as log fold changes of two groups are used to find the significant blood biomarkers. Furthermore, a set of machine learning models including Random Forest (RF), Support Vector Machine (SVM), Decision Tree (DT), Extreme Gradient Boosting Machine (XGBoost), Logistic Regression (LR), Gradient Boosting Machine (GBM) and Light Gradient Boosting Machine (LGBM) are used to build classification models to stratify benign-vs.-malignant ovarian cancer patients. Both of the analysis techniques recognized that the serumsamples carbohydrate antigen 125, carbohydrate antigen 19-9, carcinoembryonic antigen and human epididymis protein 4 are the top-most significant biomarkers as well as neutrophil ratio, thrombocytocrit, hematocrit blood samples, alanine aminotransferase, calcium, indirect bilirubin, uric acid, natriumas as general chemistry tests. Moreover, the results from predictive analysis suggest that the machine learning models can classify malignant patients from benign patients with accuracy as good as 91%. Since generally, early-stage detection is not available, machine learning detection could play a significant role in cancer diagnosis. MDPI 2022-07-25 /pmc/articles/PMC9394434/ /pubmed/35893305 http://dx.doi.org/10.3390/jpm12081211 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ahamad, Md. Martuza
Aktar, Sakifa
Uddin, Md. Jamal
Rahman, Tasnia
Alyami, Salem A.
Al-Ashhab, Samer
Akhdar, Hanan Fawaz
Azad, AKM
Moni, Mohammad Ali
Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title_full Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title_fullStr Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title_full_unstemmed Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title_short Early-Stage Detection of Ovarian Cancer Based on Clinical Data Using Machine Learning Approaches
title_sort early-stage detection of ovarian cancer based on clinical data using machine learning approaches
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9394434/
https://www.ncbi.nlm.nih.gov/pubmed/35893305
http://dx.doi.org/10.3390/jpm12081211
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