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Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species

[Image: see text] As redesigning organisms using engineering principles is one of the purposes of synthetic biology (SynBio), the standardization of experimental methods and DNA parts is becoming increasingly a necessity. The synthetic biology community focusing on the engineering of Saccharomyces c...

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Autores principales: Malcı, Koray, Watts, Emma, Roberts, Tania Michelle, Auxillos, Jamie Yam, Nowrouzi, Behnaz, Boll, Heloísa Oss, Nascimento, Cibele Zolnier Sousa do, Andreou, Andreas, Vegh, Peter, Donovan, Sophie, Fragkoudis, Rennos, Panke, Sven, Wallace, Edward, Elfick, Alistair, Rios-Solis, Leonardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9396660/
https://www.ncbi.nlm.nih.gov/pubmed/35939789
http://dx.doi.org/10.1021/acssynbio.1c00442
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author Malcı, Koray
Watts, Emma
Roberts, Tania Michelle
Auxillos, Jamie Yam
Nowrouzi, Behnaz
Boll, Heloísa Oss
Nascimento, Cibele Zolnier Sousa do
Andreou, Andreas
Vegh, Peter
Donovan, Sophie
Fragkoudis, Rennos
Panke, Sven
Wallace, Edward
Elfick, Alistair
Rios-Solis, Leonardo
author_facet Malcı, Koray
Watts, Emma
Roberts, Tania Michelle
Auxillos, Jamie Yam
Nowrouzi, Behnaz
Boll, Heloísa Oss
Nascimento, Cibele Zolnier Sousa do
Andreou, Andreas
Vegh, Peter
Donovan, Sophie
Fragkoudis, Rennos
Panke, Sven
Wallace, Edward
Elfick, Alistair
Rios-Solis, Leonardo
author_sort Malcı, Koray
collection PubMed
description [Image: see text] As redesigning organisms using engineering principles is one of the purposes of synthetic biology (SynBio), the standardization of experimental methods and DNA parts is becoming increasingly a necessity. The synthetic biology community focusing on the engineering of Saccharomyces cerevisiae has been in the foreground in this area, conceiving several well-characterized SynBio toolkits widely adopted by the community. In this review, the molecular methods and toolkits developed for S. cerevisiae are discussed in terms of their contributions to the required standardization efforts. In addition, the toolkits designed for emerging nonconventional yeast species including Yarrowia lipolytica, Komagataella phaffii, and Kluyveromyces marxianus are also reviewed. Without a doubt, the characterized DNA parts combined with the standardized assembly strategies highlighted in these toolkits have greatly contributed to the rapid development of many metabolic engineering and diagnostics applications among others. Despite the growing capacity in deploying synthetic biology for common yeast genome engineering works, the yeast community has a long journey to go to exploit it in more sophisticated and delicate applications like bioautomation.
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spelling pubmed-93966602022-08-24 Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species Malcı, Koray Watts, Emma Roberts, Tania Michelle Auxillos, Jamie Yam Nowrouzi, Behnaz Boll, Heloísa Oss Nascimento, Cibele Zolnier Sousa do Andreou, Andreas Vegh, Peter Donovan, Sophie Fragkoudis, Rennos Panke, Sven Wallace, Edward Elfick, Alistair Rios-Solis, Leonardo ACS Synth Biol [Image: see text] As redesigning organisms using engineering principles is one of the purposes of synthetic biology (SynBio), the standardization of experimental methods and DNA parts is becoming increasingly a necessity. The synthetic biology community focusing on the engineering of Saccharomyces cerevisiae has been in the foreground in this area, conceiving several well-characterized SynBio toolkits widely adopted by the community. In this review, the molecular methods and toolkits developed for S. cerevisiae are discussed in terms of their contributions to the required standardization efforts. In addition, the toolkits designed for emerging nonconventional yeast species including Yarrowia lipolytica, Komagataella phaffii, and Kluyveromyces marxianus are also reviewed. Without a doubt, the characterized DNA parts combined with the standardized assembly strategies highlighted in these toolkits have greatly contributed to the rapid development of many metabolic engineering and diagnostics applications among others. Despite the growing capacity in deploying synthetic biology for common yeast genome engineering works, the yeast community has a long journey to go to exploit it in more sophisticated and delicate applications like bioautomation. American Chemical Society 2022-08-08 2022-08-19 /pmc/articles/PMC9396660/ /pubmed/35939789 http://dx.doi.org/10.1021/acssynbio.1c00442 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Malcı, Koray
Watts, Emma
Roberts, Tania Michelle
Auxillos, Jamie Yam
Nowrouzi, Behnaz
Boll, Heloísa Oss
Nascimento, Cibele Zolnier Sousa do
Andreou, Andreas
Vegh, Peter
Donovan, Sophie
Fragkoudis, Rennos
Panke, Sven
Wallace, Edward
Elfick, Alistair
Rios-Solis, Leonardo
Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title_full Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title_fullStr Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title_full_unstemmed Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title_short Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
title_sort standardization of synthetic biology tools and assembly methods for saccharomyces cerevisiae and emerging yeast species
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9396660/
https://www.ncbi.nlm.nih.gov/pubmed/35939789
http://dx.doi.org/10.1021/acssynbio.1c00442
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