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Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci

The development of neuroimaging technology and molecular genetics has produced a large amount of imaging genetics data, which has greatly promoted the study of complex mental diseases. However, because the feature dimension of the data is too high, the correlation measure assumes that the data obey...

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Autores principales: Liu, Zehao, Zeng, Songxian, Quan, Xinglin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9398771/
https://www.ncbi.nlm.nih.gov/pubmed/36017394
http://dx.doi.org/10.1155/2022/5861928
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author Liu, Zehao
Zeng, Songxian
Quan, Xinglin
author_facet Liu, Zehao
Zeng, Songxian
Quan, Xinglin
author_sort Liu, Zehao
collection PubMed
description The development of neuroimaging technology and molecular genetics has produced a large amount of imaging genetics data, which has greatly promoted the study of complex mental diseases. However, because the feature dimension of the data is too high, the correlation measure assumes that the data obey Gaussian distribution, and traditional algorithms often cannot explain these two types of data well. This article mainly studies image genetics analysis and its application based on neural network. In this paper, based on the theory and application technology of neural network, the tree structure is established by prior knowledge, that is, each SNP site is used as a leaf node of the tree, and the LD block and genome formed by the linkage imbalance of multiple SNP sites are used as intermediate nodes. Then, the hierarchical relationship of features was introduced. On this basis, a sparse learning method based on tree structure guidance is used to select features from multiple features of multiple SNPs locus regression candidate brain regions. Finally, the identification of SNPs in feature selection is used to predict quantitative traits of brain regions. The distribution of the typical vector values obtained by the algorithm in the experimental data is basically consistent with the distribution of the median of the actual data, and the correlation coefficient obtained is closest to the actual correlation coefficient in the data set. The average correlation coefficient of the algorithm reaches 82.3%, which is about 4.2% higher than the control algorithm. Experimental results show that this method can not only significantly improve the regression performance but also detect the risk gene SNPs loci with spatial clustering features and functional interpretation significance. It is practical and effective to use it in clinical trials.
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spelling pubmed-93987712022-08-24 Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci Liu, Zehao Zeng, Songxian Quan, Xinglin Biomed Res Int Research Article The development of neuroimaging technology and molecular genetics has produced a large amount of imaging genetics data, which has greatly promoted the study of complex mental diseases. However, because the feature dimension of the data is too high, the correlation measure assumes that the data obey Gaussian distribution, and traditional algorithms often cannot explain these two types of data well. This article mainly studies image genetics analysis and its application based on neural network. In this paper, based on the theory and application technology of neural network, the tree structure is established by prior knowledge, that is, each SNP site is used as a leaf node of the tree, and the LD block and genome formed by the linkage imbalance of multiple SNP sites are used as intermediate nodes. Then, the hierarchical relationship of features was introduced. On this basis, a sparse learning method based on tree structure guidance is used to select features from multiple features of multiple SNPs locus regression candidate brain regions. Finally, the identification of SNPs in feature selection is used to predict quantitative traits of brain regions. The distribution of the typical vector values obtained by the algorithm in the experimental data is basically consistent with the distribution of the median of the actual data, and the correlation coefficient obtained is closest to the actual correlation coefficient in the data set. The average correlation coefficient of the algorithm reaches 82.3%, which is about 4.2% higher than the control algorithm. Experimental results show that this method can not only significantly improve the regression performance but also detect the risk gene SNPs loci with spatial clustering features and functional interpretation significance. It is practical and effective to use it in clinical trials. Hindawi 2022-08-16 /pmc/articles/PMC9398771/ /pubmed/36017394 http://dx.doi.org/10.1155/2022/5861928 Text en Copyright © 2022 Zehao Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Zehao
Zeng, Songxian
Quan, Xinglin
Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title_full Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title_fullStr Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title_full_unstemmed Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title_short Image Genetic Analysis and Application Research Based on QRFPR and Other Neural Network-Related SNP Loci
title_sort image genetic analysis and application research based on qrfpr and other neural network-related snp loci
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9398771/
https://www.ncbi.nlm.nih.gov/pubmed/36017394
http://dx.doi.org/10.1155/2022/5861928
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