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Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica

Serinicoccus kebangsaanensis sp. nov strain P2D13-UKM is a new species of Gram-positive bacteria isolated from a toxic diatom, Nitzschia navis-varingica. It is a halophilic aerobic, oxidase-negative, catalase-positive, circular, and colonies with white colour. Based on the 16S rRNA gene, the closest...

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Autores principales: Yusof, Aqilah, Sahrani, Fathul Karim, Ahmad, Asmat, Usup, Gires, Bunawan, Hamidun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399161/
https://www.ncbi.nlm.nih.gov/pubmed/36035744
http://dx.doi.org/10.1016/j.nmni.2022.101005
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author Yusof, Aqilah
Sahrani, Fathul Karim
Ahmad, Asmat
Usup, Gires
Bunawan, Hamidun
author_facet Yusof, Aqilah
Sahrani, Fathul Karim
Ahmad, Asmat
Usup, Gires
Bunawan, Hamidun
author_sort Yusof, Aqilah
collection PubMed
description Serinicoccus kebangsaanensis sp. nov strain P2D13-UKM is a new species of Gram-positive bacteria isolated from a toxic diatom, Nitzschia navis-varingica. It is a halophilic aerobic, oxidase-negative, catalase-positive, circular, and colonies with white colour. Based on the 16S rRNA gene, the closest species were Serinicoccus profundi MCCC 1A05965 strain 0714S6-1, 97.41%, and Serinicoccus hydrothermalis strain JLT9, 97.35%. This bacteria's predominant cellular fatty acids were iso-C15: 0 (30.1 %) and iso-C16: 0 (16.2 %). The polar lipids identified in this bacterium were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, and an unknown glycolipid. The whole-genome sequence analysis of strain P2D13-UKM showed less than 85% similarity from other Serinicoccus species. The genomic DNA G + C content is 72.2 %. Here, we report the main characteristic of strain P2D13-UKM as a new species of bacteria according to its draft genome sequence, which was deposited in Gene Bank and is publicly available under the accession number VSLG00000000.
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spelling pubmed-93991612022-08-25 Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica Yusof, Aqilah Sahrani, Fathul Karim Ahmad, Asmat Usup, Gires Bunawan, Hamidun New Microbes New Infect Taxonogenomics: Genome of a New Organism Serinicoccus kebangsaanensis sp. nov strain P2D13-UKM is a new species of Gram-positive bacteria isolated from a toxic diatom, Nitzschia navis-varingica. It is a halophilic aerobic, oxidase-negative, catalase-positive, circular, and colonies with white colour. Based on the 16S rRNA gene, the closest species were Serinicoccus profundi MCCC 1A05965 strain 0714S6-1, 97.41%, and Serinicoccus hydrothermalis strain JLT9, 97.35%. This bacteria's predominant cellular fatty acids were iso-C15: 0 (30.1 %) and iso-C16: 0 (16.2 %). The polar lipids identified in this bacterium were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, and an unknown glycolipid. The whole-genome sequence analysis of strain P2D13-UKM showed less than 85% similarity from other Serinicoccus species. The genomic DNA G + C content is 72.2 %. Here, we report the main characteristic of strain P2D13-UKM as a new species of bacteria according to its draft genome sequence, which was deposited in Gene Bank and is publicly available under the accession number VSLG00000000. Elsevier 2022-07-13 /pmc/articles/PMC9399161/ /pubmed/36035744 http://dx.doi.org/10.1016/j.nmni.2022.101005 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Taxonogenomics: Genome of a New Organism
Yusof, Aqilah
Sahrani, Fathul Karim
Ahmad, Asmat
Usup, Gires
Bunawan, Hamidun
Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title_full Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title_fullStr Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title_full_unstemmed Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title_short Serinicoccus kebangsaanensis sp. nov: A new bacterium isolated from the toxic diatom, Nitzschia navis-varingica
title_sort serinicoccus kebangsaanensis sp. nov: a new bacterium isolated from the toxic diatom, nitzschia navis-varingica
topic Taxonogenomics: Genome of a New Organism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9399161/
https://www.ncbi.nlm.nih.gov/pubmed/36035744
http://dx.doi.org/10.1016/j.nmni.2022.101005
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